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PureCN

Bioc current

Copy number calling and SNV classification using targeted short read sequencing

v2.18.0 · software · Artistic-2.0
View on Bioconductor ↗ Source ↗

Release Lineage

Entered 3.3 · May 4, 2016

Current · Requires R 4.6

1.0 In 21 of 49 releases 3.23

Description

This package estimates tumor purity, copy number, and loss of heterozygosity (LOH), and classifies single nucleotide variants (SNVs) by somatic status and clonality. PureCN is designed for targeted short read sequencing data, integrates well with standard somatic variant detection and copy number pipelines, and has support for tumor samples without matching normal samples.

Code

Code metrics have not been computed for this package yet.

Topics

Software › AssayDomain › CopyNumberVariation
Software
Software › Technology › Sequencing
Software › BiologicalQuestion › VariantAnnotation
Software › BiologicalQuestion › VariantDetection
Software › BiologicalQuestion › Coverage
Software › ResearchField › Immunology › ImmunoOncology

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