ExpressionAtlas
Bioc currentDownload datasets from EMBL-EBI Expression Atlas
Release Lineage
Entered 3.3 · May 4, 2016
Current · Requires R 4.6
Description
This package is for searching for datasets in EMBL-EBI Expression Atlas, and downloading them into R for further analysis. Each Expression Atlas dataset is represented as a SimpleList object with one element per platform. Sequencing data is contained in a SummarizedExperiment object, while microarray data is contained in an ExpressionSet or MAList object.
Test coverage
Line coverage
–
Expression
–
Tests / Examples
–
Functions
5 3 exported
Complexity
7.6 avg / 24 max
Call network
5 nodes / 4 edges
Test coverage is not measured for Bioconductor packages; nodes fall back to a neutral fill.
Call graph
Open call graph →Lowest coverage
Per-function coverage is not measured for this package yet.
Code
Structure
Lines of code
865
Files
17
Compiled share
0%
Has compiled src
No
Language breakdown
API
Exported functions
3
Internal functions
2
Testing & CI
Has tests
Yes
Test-to-code ratio
0.08
testthat edition
–
CI present
No
CI type
[]
PR gated
No
Docs
Roxygen coverage
100%
Health & Security signals
Informational signals; not verdicts.
on.exit coverage
0%
Unsafe pattern score
0
Dep constraint coverage
0%
Secret pattern count
0
Bundled 3rd-party code
2 items
Portability & License
Min R version
4.2.0
System requirements
–
C++ standard
–
License
GPL (>= 3)
License flags
SPDX valid, OSI approved
History
Versions
21
First release
2016-07-07
Latest release
2026-04-28
Avg cadence
183 days
Cold removal rate
–
Dep drift
3
LOC over versions
Per-file churn detail lives in the source pipeline: https://github.com/r-observatory/bioc-code-metrics.
Documentation
- Examples that run
- 100%
- Documented parameters
- 100%
- Return-value docs
- 100%
- References docs
- 0%
Topics
Depended on by (1)
Bioconductor (1)
People
- Anil Thanki maintainer
- Maria Keays author
- Pedro Madrigal author
Cite
Cite this package
Run in R for the authors' preferred citation:
citation("ExpressionAtlas")This is what citation() produces when a package has no citation file of its own. If it prints something else, use that.
Cite the R Observatory
For a number measured here: a download total, a coverage figure, an archival date.
From data release v2026-08-22, which the citation names so these numbers can be found later. More on citing and the projects behind them.