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Topic: Spatial or ExpressionData or Visualization

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Release: Release 2.8 (2011)

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98 packages on Bioconductor tagged Spatial or ExpressionData or Visualization, most distinct IPs first

Spatial, ExpressionData and Visualization in Topics

PackageMaintainerCategoryLatest versionDistinct IPs a monthNeeds
clusterProfiler
A Universal Enrichment Tool for Interpreting Omics DataGuangchuang Yu		Guangchuang Yusoftware19 Oct 202629,661138
GOSemSim
GO-terms Semantic Similarity MeasuresGuangchuang Yu		Guangchuang Yusoftware30 Jun 202627,49548
rtracklayer
R interface to genome annotation files and the UCSC genome browserMichael Lawrence		Michael Lawrencesoftware28 Apr 202626,11956
Rgraphviz
Provides plotting capabilities for R graph objectsKasper Daniel Hansen		Kasper Daniel Hansensoftware28 Apr 202611,26310
RBGL
An interface to the BOOST graph libraryBioconductor Package Maintainer		Bioconductor Package Maintainersoftware28 Apr 202610,6989
KEGGgraph
KEGGgraph: A graph approach to KEGG PATHWAY in R and BioconductorJitao David Zhang		Jitao David Zhangsoftware28 Apr 20266,80714
geneplotter
Graphics related functions for BioconductorBioconductor Package Maintainer		Bioconductor Package Maintainersoftware28 Apr 20264,91248
EBImage
Image processing and analysis toolbox for RAndrzej Oleś		Andrzej Oleśsoftware28 Apr 20264,23844
topGO
Enrichment Analysis for Gene OntologyFederico Marini		Federico Marinisoftware28 Apr 20263,22848
aroma.light
Light-Weight Methods for Normalization and Visualization of Microarray Data using Only Basic R Data TypesHenrik Bengtsson		Henrik Bengtssonsoftware28 Apr 20262,4818
survcomp
Performance Assessment and Comparison for Survival AnalysisBenjamin Haibe-Kains		Benjamin Haibe-Kainssoftware28 Apr 20262,38355
flowViz
Visualization for flow cytometryMike Jiang		Mike Jiangsoftware26 Aug 20262,37235
Mfuzz
Soft clustering of omics time series dataMatthias Futschik		Matthias Futschiksoftware28 Apr 20262,35316
flowClust
Clustering for Flow CytometryGreg Finak		Greg Finaksoftware28 Apr 20262,26624
ChemmineR
Cheminformatics Toolkit for RThomas Girke		Thomas Girkesoftware28 Apr 20261,85465
genefu
Computation of Gene Expression-Based Signatures in Breast CancerBenjamin Haibe-Kains		Benjamin Haibe-Kainssoftware28 Apr 20261,619116
minet
Mutual Information NETworksPatrick E. Meyer		Patrick E. Meyersoftware28 Apr 20261,5431
GeneRegionScan
GeneRegionScanLasse Folkersen		Lasse Folkersensoftware28 Apr 20261,38918
quantsmooth
Quantile smoothing and genomic visualization of array dataJan Oosting		Jan Oostingsoftware28 Apr 20261,33014
flowFP
Fingerprinting for Flow CytometryHerb Holyst		Herb Holystsoftware28 Apr 20261,30936
BioNet
Routines for the functional analysis of biological networksMarcus Dittrich		Marcus Dittrichsoftware28 Apr 20261,26250
tilingArray
Transcript mapping with high-density oligonucleotide tiling arraysZhenyu Xu		Zhenyu Xusoftware28 Apr 20261,24974
CGHcall
Calling aberrations for array CGH tumor profiles.Mark van de Wiel		Mark van de Wielsoftware28 Apr 20261,23016
idiogram
idiogramKarl J. Dykema		Karl J. Dykemasoftware28 Apr 20261,21646
Heatplus
Heatmaps with row and/or column covariates and colored clustersAlexander Ploner		Alexander Plonersoftware28 Apr 20261,1464
OLIN
Optimized local intensity-dependent normalisation of two-color microarraysMatthias Futschik		Matthias Futschiksoftware28 Apr 20261,12311
HTqPCR
Automated analysis of high-throughput qPCR dataMatthew N. McCall		Matthew N. McCallsoftware28 Apr 20261,12221
keggorthology
graph support for KO, KEGG OrthologyVJ Carey		VJ Careysoftware28 Apr 20261,11045
MEDIPS
DNA IP-seq data analysisLukas Chavez		Lukas Chavezsoftware28 Apr 20261,093102
ecolitk
Meta-data and tools for E. coliLaurent Gautier		Laurent Gautiersoftware28 Apr 20261,0877