GeneRegionScan
Bioc currentGeneRegionScan
Release Lineage
Entered 2.4 · Apr 21, 2009
Current · Requires R 4.6
Description
A package with focus on analysis of discrete regions of the genome. This package is useful for investigation of one or a few genes using Affymetrix data, since it will extract probe level data using the Affymetrix Power Tools application and wrap these data into a ProbeLevelSet. A ProbeLevelSet directly extends the expressionSet, but includes additional information about the sequence of each probe and the probe set it is derived from. The package includes a number of functions used for plotting these probe level data as a function of location along sequences of mRNA-strands. This can be used for analysis of variable splicing, and is especially well suited for use with exon-array data.
Test coverage
Line coverage
–
Expression
–
Tests / Examples
–
Functions
13 8 exported
Complexity
22.2 avg / 71 max
Call network
13 nodes / 10 edges
Test coverage is not measured for Bioconductor packages; nodes fall back to a neutral fill.
Call graph
Open call graph →Lowest coverage
Per-function coverage is not measured for this package yet.
Code
Structure
Lines of code
3,924
Files
45
Compiled share
0%
Has compiled src
No
Language breakdown
API
Exported functions
9
Internal functions
5
Testing & CI
Has tests
No
Test-to-code ratio
0.00
testthat edition
–
CI present
No
CI type
[]
PR gated
No
Docs
Roxygen coverage
11.1%
Health & Security signals
Informational signals; not verdicts.
on.exit coverage
0%
Unsafe pattern score
18
Dep constraint coverage
37.5%
Secret pattern count
0
Bundled 3rd-party code
2 items
Portability & License
Min R version
–
System requirements
–
C++ standard
–
License
GPL (>= 2)
License flags
SPDX valid, OSI approved
History
Versions
35
First release
2009-04-20
Latest release
2026-04-28
Avg cadence
183 days
Cold removal rate
–
Dep drift
1
LOC over versions
Per-file churn detail lives in the source pipeline: https://github.com/r-observatory/bioc-code-metrics.
Documentation
- Examples that run
- 33%
- Documented parameters
- 75%
- Return-value docs
- 100%
- References docs
- 0%
Topics
People
Lasse Folkersen
Cite
Cite this package
Run in R for the authors' preferred citation:
citation("GeneRegionScan")Cite the R Observatory
For a number measured here: a download total, a coverage figure, an archival date.
From data release v2026-08-23, which the citation names so these numbers can be found later. More on citing and the projects behind them.