ecolitk
Bioc currentMeta-data and tools for E. coli
Release Lineage
Entered 1.4 · May 17, 2004
Current · Requires R 4.6
Description
Meta-data and tools to work with E. coli. The tools are mostly plotting functions to work with circular genomes. They can used with other genomes/plasmids.
Test coverage
Line coverage
–
Expression
–
Tests / Examples
–
Functions
24 16 exported
Complexity
2.8 avg / 7 max
Call network
24 nodes / 14 edges
Test coverage is not measured for Bioconductor packages; nodes fall back to a neutral fill.
Call graph
Open call graph →Lowest coverage
Per-function coverage is not measured for this package yet.
Code
Structure
Lines of code
1,394
Files
37
Compiled share
0%
Has compiled src
No
Language breakdown
API
Exported functions
17
Internal functions
8
Testing & CI
Has tests
No
Test-to-code ratio
0.00
testthat edition
–
CI present
No
CI type
[]
PR gated
No
Docs
Roxygen coverage
100%
Health & Security signals
Informational signals; not verdicts.
on.exit coverage
0%
Unsafe pattern score
0
Dep constraint coverage
0%
Secret pattern count
0
Bundled 3rd-party code
2 items
Portability & License
Min R version
2.10
System requirements
–
C++ standard
–
License
GPL (>= 2)
License flags
SPDX valid, OSI approved
History
Versions
45
First release
2004-08-23
Latest release
2026-04-28
Avg cadence
182 days
Cold removal rate
–
Dep drift
7
LOC over versions
Per-file churn detail lives in the source pipeline: https://github.com/r-observatory/bioc-code-metrics.
Documentation
- Examples that run
- 100%
- Documented parameters
- 72%
- Return-value docs
- 86%
- References docs
- 9%
Topics
People
Laurent Gautier
Cite
Cite this package
Run in R for the authors' preferred citation:
citation("ecolitk")Cite the R Observatory
For a number measured here: a download total, a coverage figure, an archival date.
From data release v2026-08-25, which the citation names so these numbers can be found later. More on citing and the projects behind them.