Packages
322 packages on Bioconductor tagged ExperimentData or Preprocessing, most distinct IPs first
ExperimentData and Preprocessing in Topics
| Package | Maintainer | Category | Latest version | Distinct IPs a month | Needs |
|---|---|---|---|---|---|
| limma Linear Models for Microarray and Omics DataGordon Smyth | Gordon Smyth | software | 10 Aug 2026 | 45,965 | 6 |
| sva Surrogate Variable AnalysisJeffrey T. Leek | Jeffrey T. Leek | software | 5 May 2026 | 10,804 | 68 |
| affy Methods for Affymetrix Oligonucleotide ArraysRobert D. Shear | Robert D. Shear | software | 28 Apr 2026 | 10,556 | 11 |
| vsn Variance stabilization and calibration for microarray dataWolfgang Huber | Wolfgang Huber | software | 28 Apr 2026 | 7,536 | 33 |
| biovizBase Basic graphic utilities for visualization of genomic data.Michael Lawrence | Michael Lawrence | software | 28 Apr 2026 | 6,487 | 126 |
| ALL A data packageRobert Gentleman | Robert Gentleman | experiment | 5 May 2026 | 4,171 | 7 |
| oligo Preprocessing tools for oligonucleotide arraysBenilton Carvalho | Benilton Carvalho | software | 28 Apr 2026 | 4,087 | 52 |
| minfi Analyze Illumina Infinium DNA methylation arraysKasper Daniel Hansen | Kasper Daniel Hansen | software | 28 Apr 2026 | 4,041 | 143 |
| marray Exploratory analysis for two-color spotted microarray dataYee Hwa (Jean) Yang | Yee Hwa (Jean) Yang | software | 28 Apr 2026 | 3,311 | 7 |
| Rsubread Mapping, quantification and variant analysis of sequencing dataWei Shi | Wei Shi | software | 28 Apr 2026 | 2,951 | 8 |
| methylumi Handle Illumina methylation dataSean Davis | Sean Davis | software | 16 Aug 2026 | 2,825 | 158 |
| flowWorkspace Infrastructure for representing and interacting with gated and ungated cytometry data sets.Greg Finak | Greg Finak | software | 28 Apr 2026 | 2,804 | 61 |
| EDASeq Exploratory Data Analysis and Normalization for RNA-SeqDavide Risso | Davide Risso | software | 28 Apr 2026 | 2,602 | 111 |
| aroma.light Light-Weight Methods for Normalization and Visualization of Microarray Data using Only Basic R Data TypesHenrik Bengtsson | Henrik Bengtsson | software | 28 Apr 2026 | 2,481 | 8 |
| lumi BeadArray Specific Methods for Illumina Methylation and Expression MicroarraysLei Huang | Lei Huang | software | 28 Apr 2026 | 2,454 | 165 |
| affyPLM Methods for fitting probe-level modelsBen Bolstad | Ben Bolstad | software | 28 Apr 2026 | 2,430 | 22 |
| geneLenDataBase Lengths of mRNA transcripts for a number of genomesFederico Marini | Federico Marini | experiment | 5 May 2026 | 2,378 | 98 |
| Mfuzz Soft clustering of omics time series dataMatthias Futschik | Matthias Futschik | software | 28 Apr 2026 | 2,353 | 16 |
| gcrma Background Adjustment Using Sequence InformationZ. Wu | Z. Wu | software | 28 Apr 2026 | 2,285 | 21 |
| bcellViper Human B-cell transcriptional interactome and normal human B-cell expression dataMariano Javier Alvarez | Mariano Javier Alvarez | experiment | 5 May 2026 | 2,177 | 7 |
| openCyto Hierarchical Gating Pipeline for flow cytometry dataMike Jiang | Mike Jiang | software | 28 Apr 2026 | 2,028 | 75 |
| DMRcate Methylation array and sequencing spatial analysis methodsTim Peters | Tim Peters | software | 3 May 2026 | 1,838 | 224 |
| beadarray Quality assessment and low-level analysis for Illumina BeadArray dataMark Dunning | Mark Dunning | software | 31 Aug 2026 | 1,740 | 65 |
| wateRmelon Illumina DNA methylation array normalization and metricsLeo C Schalkwyk | Leo C Schalkwyk | software | 28 Apr 2026 | 1,720 | 172 |
| pasilla Data package with per-exon and per-gene read counts of RNA-seq samples of Pasilla knock-down by Brooks et al., Genome Research 2011.Alejandro Reyes | Alejandro Reyes | experiment | 5 May 2026 | 1,554 | 108 |
| QuasR Quantify and Annotate Short Reads in RMichael Stadler | Michael Stadler | software | 28 Apr 2026 | 1,551 | 114 |
| piano Platform for integrative analysis of omics dataLeif Varemo Wigge | Leif Varemo Wigge | software | 28 Apr 2026 | 1,509 | 94 |
| crlmm Genotype Calling (CRLMM) and Copy Number Analysis tool for Affymetrix SNP 5.0 and 6.0 and Illumina arraysBenilton S Carvalho | Benilton S Carvalho | software | 28 Apr 2026 | 1,504 | 65 |
| affycomp Graphics Toolbox for Assessment of Affymetrix Expression MeasuresRobert D. Shear | Robert D. Shear | software | 28 Apr 2026 | 1,339 | 7 |
| makecdfenv CDF Environment MakerJames W. MacDonald | James W. MacDonald | software | 28 Apr 2026 | 1,320 | 12 |