beadarray
Bioc currentQuality assessment and low-level analysis for Illumina BeadArray data
Release Lineage
Entered 1.8 · Apr 27, 2006
Current · Requires R 4.6
Description
The package is able to read bead-level data (raw TIFFs and text files) output by BeadScan as well as bead-summary data from BeadStudio. Methods for quality assessment and low-level analysis are provided.
Test coverage
Line coverage
–
Expression
–
Tests / Examples
–
Functions
164 70 exported
Complexity
6.3 avg / 54 max
Call network
164 nodes / 174 edges
Test coverage is not measured for Bioconductor packages; nodes fall back to a neutral fill.
Call graph
Open call graph →Lowest coverage
Per-function coverage is not measured for this package yet.
Code
Structure
Lines of code
14,530
Files
161
Compiled share
10.2%
Has compiled src
Yes
Language breakdown
API
Exported functions
69
Internal functions
59
Testing & CI
Has tests
No
Test-to-code ratio
0.00
testthat edition
–
CI present
No
CI type
[]
PR gated
No
Docs
Roxygen coverage
100%
Health & Security signals
Informational signals; not verdicts.
on.exit coverage
0%
Unsafe pattern score
2
Dep constraint coverage
16.7%
Secret pattern count
0
Bundled 3rd-party code
2 items
Portability & License
Min R version
3.5.0
System requirements
–
C++ standard
–
License
MIT + file LICENSE
License flags
SPDX valid, OSI approved
History
Versions
41
First release
2006-04-25
Latest release
2026-07-07
Avg cadence
182 days
Cold removal rate
100%
Dep drift
24
LOC over versions
Per-file churn detail lives in the source pipeline: https://github.com/r-observatory/bioc-code-metrics.
Documentation
- Examples that run
- 82%
- Documented parameters
- 96%
- Return-value docs
- 85%
- References docs
- 17%
Topics
Depended on by (9)
Bioconductor (8)
CRAN (1)
People
Mark Dunning
Cite
Cite this package
Run in R for the authors' preferred citation:
citation("beadarray")Cite the R Observatory
For a number measured here: a download total, a coverage figure, an archival date.
From data release v2026-08-22, which the citation names so these numbers can be found later. More on citing and the projects behind them.