crlmm
Bioc currentGenotype Calling (CRLMM) and Copy Number Analysis tool for Affymetrix SNP 5.0 and 6.0 and Illumina arrays
Release Lineage
Entered 2.4 · Apr 21, 2009
Current · Requires R 4.6
Description
Faster implementation of CRLMM specific to SNP 5.0 and 6.0 arrays, as well as a copy number tool specific to 5.0, 6.0, and Illumina platforms.
Test coverage
Line coverage
–
Expression
–
Tests / Examples
–
Functions
185 22 exported
Complexity
5.5 avg / 36 max
Call network
185 nodes / 242 edges
Test coverage is not measured for Bioconductor packages; nodes fall back to a neutral fill.
Call graph
Open call graph →Lowest coverage
Per-function coverage is not measured for this package yet.
Code
Structure
Lines of code
12,099
Files
96
Compiled share
10.3%
Has compiled src
Yes
Language breakdown
API
Exported functions
28
Internal functions
133
Testing & CI
Has tests
Yes
Test-to-code ratio
0.01
testthat edition
–
CI present
No
CI type
[]
PR gated
No
Docs
Roxygen coverage
100%
Health & Security signals
Informational signals; not verdicts.
on.exit coverage
0%
Unsafe pattern score
0
Dep constraint coverage
22.7%
Secret pattern count
0
Bundled 3rd-party code
2 items
Portability & License
Min R version
2.14.0
System requirements
–
C++ standard
–
License
Artistic-2.0
License flags
SPDX valid, OSI approved
History
Versions
35
First release
2009-07-15
Latest release
2026-04-28
Avg cadence
183 days
Cold removal rate
100%
Dep drift
18
LOC over versions
Per-file churn detail lives in the source pipeline: https://github.com/r-observatory/bioc-code-metrics.
Documentation
- Examples that run
- 91%
- Documented parameters
- 97%
- Return-value docs
- 100%
- References docs
- 29%
Topics
Depended on by (6)
Bioconductor (6)
People
Benilton S Carvalho
Cite
Cite this package
Run in R for the authors' preferred citation:
citation("crlmm")Cite the R Observatory
For a number measured here: a download total, a coverage figure, an archival date.
From data release v2026-08-23, which the citation names so these numbers can be found later. More on citing and the projects behind them.