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Topic: VariantAnnotation or Bayesian or MicroarrayData

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102 packages on Bioconductor tagged VariantAnnotation or Bayesian or MicroarrayData, most distinct IPs first

VariantAnnotation, Bayesian and MicroarrayData in Topics

PackageMaintainerCategoryLatest versionDistinct IPs a monthNeeds
VariantAnnotation
Annotation of Genetic VariantsBioconductor Package Maintainer		Bioconductor Package Maintainersoftware28 Apr 20269,77176
maftools
Summarize, Analyze and Visualize MAF FilesAnand Mayakonda		Anand Mayakondasoftware28 Apr 20263,41926
infercnv
Infer Copy Number Variation from Single-Cell RNA-Seq DataChristophe Georgescu		Christophe Georgescusoftware28 Apr 20262,517194
celda
CEllular Latent Dirichlet AllocationJoshua Campbell		Joshua Campbellsoftware28 Apr 20262,011127
sesameData
Supporting Data for SeSAMe PackageWanding Zhou		Wanding Zhouexperiment5 May 20261,19872
PureCN
Copy number calling and SNV classification using targeted short read sequencingMarkus Riester		Markus Riestersoftware28 Apr 20261,083101
decontX
Decontamination of single cell genomics dataJoshua Campbell		Joshua Campbellsoftware28 Apr 20261,040233
bladderbatch
Bladder gene expression data illustrating batch effectsJeffrey T. Leek		Jeffrey T. Leekexperiment5 May 20269497
CoGAPS
Coordinated Gene Activity in Pattern SetsElana J. Fertig		Elana J. Fertigsoftware28 Apr 202680594
NormalyzerDE
Evaluation of normalization methods and calculation of differential expression analysis statisticsJakob Willforss		Jakob Willforsssoftware28 Apr 2026797106
phenopath
Genomic trajectories with heterogeneous genetic and environmental backgroundsKieran Campbell		Kieran Campbellsoftware28 Apr 202678554
ASSIGN
Adaptive Signature Selection and InteGratioN (ASSIGN)Ying Shen		Ying Shensoftware28 Apr 202677093
TVTB
TVTB: The VCF Tool BoxKevin Rue-Albrecht		Kevin Rue-Albrechtsoftware28 Apr 2026758159
minfiData
Example data for the Illumina Methylation 450k arrayKasper Daniel Hansen		Kasper Daniel Hansenexperiment5 May 2026731146
myvariant
Accesses MyVariant.info variant query and annotation servicesAdam Mark, Chunlei Wu		Adam Mark, Chunlei Wusoftware28 Apr 2026701123
AMARETTO
Regulatory Network Inference and Driver Gene Evaluation using Integrative Multi-Omics Analysis and Penalized RegressionOlivier Gevaert		Olivier Gevaertsoftware28 Apr 2026700149
RJMCMCNucleosomes
Bayesian hierarchical model for genome-wide nucleosome positioning with high-throughput short-read data (MNase-Seq)Astrid Deschênes		Astrid Deschênessoftware28 Apr 202669167
seqCAT
High Throughput Sequencing Cell Authentication ToolkitErik Fasterius		Erik Fasteriussoftware28 Apr 202668099
cellbaseR
Querying annotation data from the high performance Cellbase webMohammed OE Abdallah		Mohammed OE Abdallahsoftware28 Apr 202666662
bandle
An R package for the Bayesian analysis of differential subcellular localisation experimentsOliver M. Crook		Oliver M. Crooksoftware29 Apr 2026646239
BaalChIP
BaalChIP: Bayesian analysis of allele-specific transcription factor binding in cancer genomesInes de Santiago		Ines de Santiagosoftware29 Apr 2026623103
geneAttribution
Identification of candidate genes associated with genetic variationArthur Wuster		Arthur Wustersoftware28 Apr 202661076
BUSseq
Batch Effect Correction with Unknow Subtypes for scRNA-seq dataFangda Song		Fangda Songsoftware28 Apr 202660031
gemma.R
A wrapper for Gemma's Restful API to access curated gene expression data and differential expression analysesPaul Pavlidis		Paul Pavlidissoftware5 Oct 202659092
ipdDb
IPD IMGT/HLA and IPD KIR database for Homo sapiensSteffen Klasberg		Steffen Klasbergsoftware28 Apr 202657465
IgGeneUsage
Differential gene usage in immune repertoiresSimo Kitanovski		Simo Kitanovskisoftware28 Apr 202657379
CBNplot
plot bayesian network inferred from gene expression data based on enrichment analysis resultsNoriaki Sato		Noriaki Satosoftware28 Apr 2026559166
FlowSorted.Blood.450k
Illumina HumanMethylation data on sorted blood cell populationsAndrew E Jaffe		Andrew E Jaffeexperiment5 May 2026522144
BAGS
A Bayesian Approach for Geneset SelectionAlejandro Quiroz-Zarate		Alejandro Quiroz-Zaratesoftware30 Oct 20255078
AlphaMissenseR
Accessing AlphaMissense Data Resources in RMartin Morgan		Martin Morgansoftware10 Sep 202650459