CBNplot
Bioc currentplot bayesian network inferred from gene expression data based on enrichment analysis results
Release Lineage
Entered 3.17 · Apr 26, 2023
Current · Requires R 4.6
Description
This package provides the visualization of bayesian network inferred from gene expression data. The networks are based on enrichment analysis results inferred from packages including clusterProfiler and ReactomePA. The networks between pathways and genes inside the pathways can be inferred and visualized.
None published for Bioconductor
Test coverage
Line coverage
–
Expression
–
Tests / Examples
–
Functions
14 10 exported
Complexity
21.5 avg / 77 max
Call network
14 nodes / 11 edges
Test coverage is not measured for Bioconductor packages; nodes fall back to a neutral fill.
Call graph
Open call graph →Lowest coverage
Per-function coverage is not measured for this package yet.
Code
Structure
Lines of code
4,242
Files
34
Compiled share
0%
Has compiled src
No
Language breakdown
API
Exported functions
10
Internal functions
4
Testing
Has tests
Yes
Test-to-code ratio
0.02
testthat edition
3
Docs
Roxygen coverage
100%
Health & Security signals
Informational signals; not verdicts.
on.exit coverage
–
Unsafe pattern score
6
Dep constraint coverage
3.8%
Secret pattern count
0
Bundled 3rd-party code
2 items
Portability & License
Min R version
4.3.0
System requirements
–
C++ standard
–
License
Artistic-2.0
License flags
SPDX valid, OSI approved
History
Versions
7
First release
2023-04-25
Latest release
2026-04-28
Avg cadence
189 days
Cold removal rate
–
Dep drift
1
LOC over versions
Per-file churn detail lives in the source pipeline: https://github.com/r-observatory/bioc-code-metrics.
Documentation
- Help pages
- 15 (1 internal)includes a package overview page
- Examples that run
- 100%10 run in a plain check
- Exported functions with examples
- 100%
- Documented parameters
- 100%
- Return-value docs
- 100%
- Help pages citing references
- 0%
- CBNplot HTML
Repository practices
3 development-tooling and community-health practices detected across 2 families in the upstream repository
Checks run against github.com/noriakis/cbnplot on 2026-10-11.
The R CMD check workflow runs on Windows
Datasets
| Name | Class | Size | Also in |
|---|---|---|---|
| exampleEaRes | – | – | – |
| exampleGeneExp | data.frame | 7 × 100 | No other package |
Topics
People
- Noriaki Sato maintainer author
Cite
Cite this package
Run in R for the authors' entry:
citation("CBNplot")The package provides a citation file, so citation() returns the authors' own entry.
It points to 10.1093/bioinformatics/btac175.
Cite the R Observatory
For a number measured here: a download total, a coverage figure, an archival date.
From data release v2026-10-17, which the citation names so these numbers can be found later. More on citing and the projects behind them.