phenopath
Bioc currentGenomic trajectories with heterogeneous genetic and environmental backgrounds
Release Lineage
Entered 3.6 · Oct 31, 2017
Current · Requires R 4.6
Description
PhenoPath infers genomic trajectories (pseudotimes) in the presence of heterogeneous genetic and environmental backgrounds and tests for interactions between them.
Test coverage
Line coverage
–
Expression
–
Tests / Examples
–
Functions
62 9 exported
Complexity
2.6 avg / 23 max
Call network
62 nodes / 57 edges
Test coverage is not measured for Bioconductor packages; nodes fall back to a neutral fill.
Call graph
Open call graph →Lowest coverage
Per-function coverage is not measured for this package yet.
Code
Structure
Lines of code
2,599
Files
32
Compiled share
34.9%
Has compiled src
Yes
Language breakdown
API
Exported functions
9
Internal functions
22
Recent export changes
Testing & CI
Has tests
Yes
Test-to-code ratio
0.11
testthat edition
–
CI present
Yes
CI type
["travis"]
PR gated
No
Docs
Roxygen coverage
100%
Health & Security signals
Informational signals; not verdicts.
on.exit coverage
–
Unsafe pattern score
0
Dep constraint coverage
12.5%
Secret pattern count
0
Bundled 3rd-party code
2 items
Portability & License
Min R version
–
System requirements
–
C++ standard
–
License
Apache License (== 2.0)
License flags
not SPDX, not OSI
History
Versions
18
First release
2017-10-30
Latest release
2026-04-28
Avg cadence
182 days
Cold removal rate
–
Dep drift
0
LOC over versions
Per-file churn detail lives in the source pipeline: https://github.com/r-observatory/bioc-code-metrics.
Documentation
- Examples that run
- 100%
- Documented parameters
- 99%
- Return-value docs
- 100%
- References docs
- 0%
Topics
Depended on by (2)
People
Kieran Campbell