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CoGAPS

Bioc current

Coordinated Gene Activity in Pattern Sets

v3.32.0 · software · BSD_3_clause + file LICENSE
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Release Lineage

Entered 2.7 · Oct 18, 2010

Current · Requires R 4.6

1.0 In 32 of 49 releases 3.23

Description

Coordinated Gene Activity in Pattern Sets (CoGAPS) implements a Bayesian MCMC matrix factorization algorithm, GAPS, and links it to gene set statistic methods to infer biological process activity. It can be used to perform sparse matrix factorization on any data, and when this data represents biomolecules, to do gene set analysis.

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Topics

Software › AssayDomain › GeneExpression
Software › AssayDomain › Transcription
Software › BiologicalQuestion › GeneSetEnrichment
Software › BiologicalQuestion › DifferentialExpression
Software › StatisticalMethod › Bayesian
Software › StatisticalMethod › Clustering
Software › StatisticalMethod › TimeCourse
Software › Technology › Sequencing › RNASeq
Software › Technology › Microarray
Software › WorkflowStep › MultipleComparison
Software › StatisticalMethod › DimensionReduction
Software › ResearchField › Immunology › ImmunoOncology

Depended on by (3)

Bioconductor (3)

projectR SpaceMarkers ATACCoGAPS

People

Elana J. Fertig