R Observatory: Metrics for omopgenerics version 1.4.1

Balamuta, James Joseph

doi:10.5281/zenodo.21843040

omopgenerics

1.4.1

Methods and Classes for the OMOP Common Data Model

22packages depend

24.8Kdownloads / year

87.9%test coverage

13/13checks pass

Overview

About

Maintained by Martí CatalàFirst published 2024-01-1726 releasesCRAN page ↗GitHub ↗

Provides definitions of core classes and methods used by analytic pipelines that query the OMOP (Observational Medical Outcomes Partnership) common data model.

Install

R (CRAN)pak (dev)Ubuntu (r2u)Fedora (COPR)openSUSE (OBS)

install.packages("omopgenerics", repos = "https://cloud.r-project.org/")

Installs the current CRAN release. Prebuilt binaries on Windows and macOS.

if (!requireNamespace("pak", quietly = TRUE))
  install.packages("pak", repos = "https://cloud.r-project.org/")
pak::pak("darwin-eu/omopgenerics")

Development version from darwin-eu/omopgenerics. Installs pak first if it is not already available.

Release

# enable cranapt (r2u) if it is not already set up, then install
grep -rqs r2u.stat.illinois.edu /etc/apt/sources.list /etc/apt/sources.list.d/ \
  || curl -fsSL https://raw.githubusercontent.com/eddelbuettel/r2u/master/inst/scripts/add_cranapt_noble.sh | sudo bash
sudo apt install -y r-cran-omopgenerics

Fast Ubuntu binaries via r2u (no compilation). The cranapt setup runs once and is skipped when it is already enabled.

bspm (used by r2u) also needs make: sudo apt install make

# enable the iucar/cran COPR if it is not already present, then install
ls /etc/yum.repos.d/*iucar*cran*.repo >/dev/null 2>&1 \
  || sudo dnf copr enable -y iucar/cran
sudo dnf install -y R-CRAN-omopgenerics

RPMs from the iucar/cran COPR, rebuilt from CRAN.

For install.packages() integration in R, also: sudo dnf install R-CoprManager

# add the autoCRAN OBS repo (Tumbleweed) if it is missing, then install
zypper -q lr | grep -qi autoCRAN \
  || sudo zypper addrepo https://download.opensuse.org/repositories/devel:/languages:/R:/autoCRAN/openSUSE_Tumbleweed/devel:languages:R:autoCRAN.repo
sudo zypper install -y R-omopgenerics

RPMs auto-built from CRAN on openSUSE OBS (Tumbleweed).

Health

CRAN checks

13OK

Slowest check: 7.5 min · r-oldrel-macos-x86_64

Code health

Yes

Tests · ratio 0.53

87.9%

Coverage · measured lines

100%

Documentation · exports

14

Dependencies · direct

Check history

OK2026-08-05
13 OK · 0 NOTE · 0 WARNING · 0 ERROR · 0 FAILURE
NOTE2026-08-01
12 OK · 1 NOTE · 0 WARNING · 0 ERROR · 0 FAILURE
OK2026-06-09
13 OK · 0 NOTE · 0 WARNING · 0 ERROR · 0 FAILURE
ERROR2026-06-07
12 OK · 0 NOTE · 0 WARNING · 1 ERROR · 0 FAILURE
OK2026-03-10
14 OK · 0 NOTE · 0 WARNING · 0 ERROR · 0 FAILURE

Documentation

READMEYes · 590 wordsVignettesYes · dynamicpkgdown siteNoNEWSYes · 100% structuredCode of conductNoContributing guideNo

Examples that run: 74%
Documented parameters: 95%
Return-value docs: 90%
References docs: 0%

Downloads

24.8K

CRAN downloads in the past year

Rank #2,879 · ~68/day · ~2.1K/mo

Releases R versions

Daily download trend is not available in this view yet.

1.7K30 days

5.1K90 days

24.8K1 year

Compare downloads with other packages →

Also on649 r2u20 autocran

Repository

GitHub ↗ darwin-eu/omopgenerics

0Stars

5Forks

2Open issues

0Open PRs

13Releases

1,071Commits

10Contributors

License Apache-2.0 · 1,071 commits · Last activity 2026-07-24

Forks over time

2025-08-01 · 22026-07-09 · 5

Repository practices

Upstream repositoryBeta

7 development-tooling and community-health practices detected across 6 families in the upstream repository

Checks run against github.com/darwin-eu/omopgenerics on 2026-08-16.

Continuous integration (1)

GitHub Actions

Reproducibility and dev environment (1)

data-raw/

CRAN release process (2)

cran-comments.mdCRAN-SUBMISSION

Docs source (1)

README.Rmd

Show all practices

Lint, format, editor (1)

RStudio project

Coverage (1)

Codecov

How this is detected·Detection ruleset v1 (2026-07-18)

Dependencies

Declared dependencies

27 external dependencies (excludes base and recommended)

Depends (1)

R >= 4.1

Imports (14)

cli dbplyr dplyr generics glue lifecyclemethodspurrr rlang snakecase stringi stringr tidyr vctrs

LinkingTo (0)

none

Suggests (14)

bit64 CDMConnector covr duckdb gt here jsonlite knitr omock openxlsx readr rmarkdown testthat withr

Enhances (0)

none

Dependency license breakdown →

Code & Tests

Datasets

People & History

People (6)

Maintainer (1)

Martí Català

Author, Maintainer · added in 0.2.3

Authors (2)

Martí Català

Author, Maintainer · added in 0.2.3

Edward Burn

Author

Contributors (4)

Marta Alcalde-Herraiz

Contributor

Adam Black

Contributor

Mike Du

Contributor

Yuchen Guo

Contributor

Listed in earlier versions (2)

Marti Catala

no longer listed · 0.0.1 to 0.2.2

Nuria Mercade-Besora

no longer listed · 0.2.3

Package Timeline

26 releases. Pick two to compare their code metrics. R releases are shown for context.

1.4.1Latest
2026-07-23 · current release · diff ↗
1.4.0
2026-06-17 · diff ↗
R
R 4.6.0 released · 2026-04-24
1.3.7
2026-03-07 · diff ↗
1.3.6
2026-01-28 · diff ↗
1.3.5
2025-12-10 · diff ↗
1.3.4
2025-12-01 · diff ↗
1.3.3
2025-11-11 · diff ↗
1.3.2
2025-10-13 · diff ↗
1.3.1
2025-09-18 · diff ↗
1.3.0
2025-07-15 · diff ↗
1.2.0
2025-05-19 · diff ↗
R
R 4.5.0 released · 2025-04-11
1.1.1
2025-03-17 · diff ↗
1.1.0
2025-02-25 · diff ↗
1.0.0
2025-02-14 · diff ↗

Show 14 earlier events

0.4.1
2024-12-05 · diff ↗
0.4.0
2024-11-22 · diff ↗
0.3.1
2024-09-21 · diff ↗
0.3.0
2024-08-17 · diff ↗
0.2.3
2024-07-03 · diff ↗
0.2.2
2024-06-19 · diff ↗
0.2.1
2024-05-17 · diff ↗
0.2.0
2024-04-30 · diff ↗
R
R 4.4.0 released · 2024-04-24
0.1.2
2024-03-10 · diff ↗
0.0.3
2024-02-23 · diff ↗
0.0.2
2024-01-30 · diff ↗
0.0.1
2024-01-17
R
R 4.3.0 released · 2023-04-21

Package metadata

First published: 2024-01-17
Total releases: 26 / 2 yrs
License: Apache License (>= 2)
Minimum R: ≥ 4.1
Bundled data: 0.1 KB / 1 file
Download size: 276 KB
Installed size: not tracked yet
With dependencies: not tracked yet

Cite

Cite this package

Run in R for the authors' preferred citation:

citation("omopgenerics")

Format

Català, M., Alcalde-Herraiz, M., Black, A., Burn, E., Du, M., & Guo, Y. (2026). omopgenerics: Methods and Classes for the OMOP Common Data Model (Version 1.4.1) [Computer software]. https://doi.org/10.32614/CRAN.package.omopgenerics

This is what citation() produces when a package has no citation file of its own. If it prints something else, use that.

Cite the R Observatory

For a number measured here: a download total, a coverage figure, an archival date.

Format

APA

Balamuta, J. J. (2026). R Observatory: Metrics for omopgenerics version 1.4.1 [Data set]. HJJB, LLC. Data release v2026-08-17. https://doi.org/10.5281/zenodo.21843040

From data release v2026-08-17, which the citation names so these numbers can be found later. More on citing and the projects behind them.

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