R Observatory: Metrics for DrugExposureDiagnostics version 1.2.0

Balamuta, James Joseph

doi:10.5281/zenodo.21843040

DrugExposureDiagnostics

1.2.0Package record

Diagnostics for OMOP Common Data Model Drug Records

0packages depend

8.1Kdownloads / year

72.5%test coverage

13/13flavors OK

Overview

About

Maintained by Ger InbergCRAN page ↗GitHub ↗Website ↗Issues ↗

Ingredient specific diagnostics for drug exposure records in the Observational Medical Outcomes Partnership (OMOP) common data model.

Changes in 1.2.0

DaysBetween: remove sampling and add a vignette(#354)

From NEWS.md in the release

Install

R (CRAN)pak (dev)Ubuntu (r2u)Fedora (COPR)openSUSE (OBS)

install.packages("DrugExposureDiagnostics", repos = "https://cloud.r-project.org/")

Installs the current CRAN release. Prebuilt binaries on Windows and macOS.

if (!requireNamespace("pak", quietly = TRUE))
  install.packages("pak", repos = "https://cloud.r-project.org/")
pak::pak("darwin-eu/DrugExposureDiagnostics")

Development version from darwin-eu/DrugExposureDiagnostics. Installs pak first if it is not already available.

Release

# enable cranapt (r2u) if it is not already set up, then install
grep -rqs r2u.stat.illinois.edu /etc/apt/sources.list /etc/apt/sources.list.d/ \
  || curl -fsSL https://raw.githubusercontent.com/eddelbuettel/r2u/master/inst/scripts/add_cranapt_noble.sh | sudo bash
sudo apt install -y r-cran-drugexposurediagnostics

Fast Ubuntu binaries via r2u (no compilation). The cranapt setup runs once and is skipped when it is already enabled. We list this channel from recorded r2u download activity rather than from a live index of the repository, so treat it as last known rather than guaranteed.

bspm (used by r2u) also needs make: sudo apt install make

# enable the iucar/cran COPR if it is not already present, then install
ls /etc/yum.repos.d/*iucar*cran*.repo >/dev/null 2>&1 \
  || sudo dnf copr enable -y iucar/cran
sudo dnf install -y R-CRAN-DrugExposureDiagnostics

RPMs from the iucar/cran COPR, rebuilt from CRAN.

For install.packages() integration in R, also: sudo dnf install R-CoprManager

# add the autoCRAN OBS repo (Tumbleweed) if it is missing, then install
zypper -q lr | grep -qi autoCRAN \
  || sudo zypper addrepo https://download.opensuse.org/repositories/devel:/languages:/R:/autoCRAN/openSUSE_Tumbleweed/devel:languages:R:autoCRAN.repo
sudo zypper install -y R-DrugExposureDiagnostics

RPMs auto-built from CRAN on openSUSE OBS (Tumbleweed). We list this channel from recorded autoCRAN download activity rather than from a live index of the repository, so treat it as last known rather than guaranteed.

Health

CRAN checks

13OK

CRAN check page ↗

Slowest check: 12.1 min · r-oldrel-windows-x86_64

Status changes

OK13 OK2026-10-03
NOTE11 OK, 2 NOTE2026-09-30
ERROR12 OK, 1 ERROR2026-09-04
OK13 OK2026-08-05
NOTE12 OK, 1 NOTE2026-08-01

Show 7 earlier changesHide 7 earlier changes

OK13 OK2026-06-09
ERROR12 OK, 1 ERROR2026-06-08
OK13 OK2026-05-24
ERROR12 OK, 1 ERROR2026-05-17
OK13 OK2026-05-15
ERROR12 OK, 1 ERROR2026-05-13
OK14 OK2026-03-10

Advisories

none known

How this is measured·How advisories are found

Documentation

In release 1.2.0

READMEYes · 272 wordsVignettesYes · 13 · dynamicNEWSYes · 100% structured · mentions 1.2.0Citation fileNoWebsiteYes · pkgdown

Help pages: 43 (2 internal)includes a package overview page
Examples that run: 0%6 never run
Exported functions with examples: 38%
Documented parameters: 96%
Return-value docs: 57%
Help pages citing references: 0%

Vignettes (13)

Days Supply HTML
Diagnostics Summary HTML
Drug Time Between HTML
DrugDose HTML
DrugDuration HTML
DrugSig HTML
DrugSourceConcepts HTML
DrugTypes HTML
IntroductionToDrugExposureDiagnostics HTML
Missingness HTML

Show 3 moreHide 3 vignettes

How these are measured

Downloads

8.1K

CRAN downloads in the past year

Rank #4,161 · ~22/day · ~676/mo

Releases R versions

Daily download trend is not available in this view yet.

76530 days

2.1K90 days

8.1K1 year

Compare downloads with other packages →

Also on891 r2u11 autocran

How downloads are counted

Repository

darwin-eu/drugexposurediagnostics ↗Organization: darwin-eu

4Stars

3Forks

2Open issues

0Open PRs

27Releases

71Commits

2Commit identities

License file reads as Apache-2.0 · 71 commits · Last activity 2026-09-29 · 0% stars, 30d

Responsiveness

How these are sampled

PRs merged (all time): 25%
Median days to close, 50 most recently updated closed issues: 3
Median days to close, 50 most recently updated closed PRs: 0

Stars over time

2024-08-27 · 42026-07-07 · 4

How these are measured

PracticesBeta

10 development-tooling and community-health practices detected across 5 families in the upstream repository

Checks run against github.com/darwin-eu/drugexposurediagnostics on 2026-10-11.

Continuous integration (2)

GitHub ActionsR CMD check workflow

The R CMD check workflow runs on Linux, macOS and Windows

Docs source (4)

README.Rmdpkgdown

GitHub Pages site last deployed 2026-09-29 · The repository has a site deploy workflow

pkgdown site last built 2026-09-29

Coverage (1)

Coverage reporting

CRAN release process (2)

cran-comments.mdCRAN-SUBMISSION

Show all practicesHide 1 practice

Lint, format, editor (1)

RStudio project

How this is detected·Detection ruleset v3 (2026-09-26)

Dependencies

Declared dependencies

31 external dependencies (excludes base and recommended)

Installing DrugExposureDiagnostics adds 48 packages (25 with compiled code, 36 MB of source tarballs). Heaviest: stringi 11 MB, CDMConnector 4.0 MB, CodelistGenerator 3.1 MB.

Depends (1)

R >= 4.0

Imports (11)

CDMConnector dplyr magrittr (>= 2.0.0)rlang tidyr tidyselect (>= 1.2.0)checkmate glue DrugUtilisation omopgenerics R6

LinkingTo (0)

none

Suggests (20)

testthat duckdb odbc DBI knitr rmarkdown zip lubridate tibble DT SqlRender ggplot2 plotly tictoc here shiny shinycssloaders shinyWidgets shinyjs shinytest2

Enhances (0)

none

Dependency license breakdown →

Reverse dependencies

0direct

0indirect

Nothing depends on this yet.

How these are counted

Code & Tests

People & History

People (9)

Ger Inberg

Author, Maintainer since 0.4.0 (2023)

Author

Author

Contributor

Contributor

Contributor

Contributor

Contributor

Copyright holder

Releases (29)

Pick two releases to compare their code metrics.

1.2.0Latest
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2026-09-28 · current release · diff ↗
1.1.10
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2026-07-26 · diff ↗
1.1.9
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2026-06-30 · diff ↗
R
R 4.6.0 released · 2026-04-24
1.1.8
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2026-04-15 · diff ↗
1.1.7
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2026-04-15 · diff ↗
1.1.6
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2026-02-16 · diff ↗
1.1.5
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2025-09-16 · diff ↗
1.1.4
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2025-06-16 · diff ↗
1.1.3
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2025-05-28 · diff ↗
R
R 4.5.0 released · 2025-04-11
1.1.2
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2025-03-13 · diff ↗
1.1.1
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2025-02-06 · diff ↗ ·
added 2 exports
dataPlotPanel, metaDataPanel
1.1.0
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2024-12-22 · diff ↗
1.0.10
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2024-11-22 · diff ↗ ·
added 1 export
runBenchmarkExecuteSingleIngredient
1.0.9
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2024-09-25 · diff ↗ ·
added 1 export
viewResults

Show 18 earlier eventsHide 18 earlier events

1.0.8
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2024-09-10 · diff ↗
1.0.7
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2024-07-30 · diff ↗
1.0.6
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2024-07-02 · diff ↗
1.0.5
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2024-06-12 · diff ↗ ·
removed 1 export
getEunomiaCdm

added 1 export
mockDrugExposure
R
R 4.4.0 released · 2024-04-24
1.0.4
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2024-03-18 · diff ↗
1.0.3
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2024-01-31 · diff ↗
1.0.2
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2024-01-14 · diff ↗
1.0.1
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2023-11-06 · diff ↗
1.0.0
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2023-10-25 · diff ↗
0.4.7
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2023-10-16 · diff ↗
0.4.6
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2023-08-16 · diff ↗
0.4.4
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2023-07-16 · diff ↗
0.4.3
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2023-06-13 · diff ↗
R
R 4.3.0 released · 2023-04-21
0.4.1
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2023-03-13 · diff ↗
0.4.0
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2023-03-08
R
R 4.2.0 released · 2022-04-22

Package metadata

First published: 2023-03-08
Total releases: 29 / 3 yrs
License: Apache License (>= 2)
Minimum R: ≥ 4.0
Download size: 1.6 MB

Cite

Cite this package

Run in R for the authors' preferred citation:

citation("DrugExposureDiagnostics")

Format

Inberg, G., Erasmus MC, Burkard, T., Burn, E., Catala, M., Du, M., Guo, Y., Li, X., & Williams, R. (2026). DrugExposureDiagnostics: Diagnostics for OMOP Common Data Model Drug Records (Version 1.2.0) [Computer software]. https://doi.org/10.32614/CRAN.package.DrugExposureDiagnostics

This package has no citation file, so citation() returns this entry built from DESCRIPTION.

Cite the R Observatory

For a number measured here: a download total, a coverage figure, an archival date.

Format

APA

Balamuta, J. J. (2026). R Observatory: Metrics for DrugExposureDiagnostics version 1.2.0 [Data set]. HJJB, LLC. Data release v2026-10-18. https://doi.org/10.5281/zenodo.21843040

From data release v2026-10-18, which the citation names so these numbers can be found later. More on citing and the projects behind them.

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