R Observatory: Metrics for visOmopResults version 1.5.1

Balamuta, James Joseph

doi:10.5281/zenodo.21843040

visOmopResults

1.5.1Package record

Graphs and Tables for OMOP Results

0packages dependsuggested by 16

12.9Kdownloads / year

68.5%test coverage

13/13flavors OK

Overview

About

Maintained by Núria Mercadé-BesoraCRAN page ↗GitHub ↗Website ↗Issues ↗

Provides methods to transform omop_result objects into formatted tables and figures, facilitating the visualisation of study results working with the Observational Medical Outcomes Partnership (OMOP) Common Data Model.

Changes in 1.5.1

Update "darwin" style for flextable: removed extra line after cell text
Add support for continuos and discrete palette themes using brand.yml
Fix logic to update columns in tables when non-unique rows produced in header: only non-unique columns within each different group will be added
Add X label text for alluvialPlot()
Frequency of gt and tinytable non-supported style warnings updated to every 8h

From NEWS.md in the release

Install

R (CRAN)pak (dev)Ubuntu (r2u)Fedora (COPR)openSUSE (OBS)

install.packages("visOmopResults", repos = "https://cloud.r-project.org/")

Installs the current CRAN release. Prebuilt binaries on Windows and macOS.

if (!requireNamespace("pak", quietly = TRUE))
  install.packages("pak", repos = "https://cloud.r-project.org/")
pak::pak("darwin-eu/visOmopResults")

Development version from darwin-eu/visOmopResults. Installs pak first if it is not already available.

Release

# enable cranapt (r2u) if it is not already set up, then install
grep -rqs r2u.stat.illinois.edu /etc/apt/sources.list /etc/apt/sources.list.d/ \
  || curl -fsSL https://raw.githubusercontent.com/eddelbuettel/r2u/master/inst/scripts/add_cranapt_noble.sh | sudo bash
sudo apt install -y r-cran-visomopresults

Fast Ubuntu binaries via r2u (no compilation). The cranapt setup runs once and is skipped when it is already enabled. We list this channel from recorded r2u download activity rather than from a live index of the repository, so treat it as last known rather than guaranteed.

bspm (used by r2u) also needs make: sudo apt install make

# enable the iucar/cran COPR if it is not already present, then install
ls /etc/yum.repos.d/*iucar*cran*.repo >/dev/null 2>&1 \
  || sudo dnf copr enable -y iucar/cran
sudo dnf install -y R-CRAN-visOmopResults

RPMs from the iucar/cran COPR, rebuilt from CRAN.

For install.packages() integration in R, also: sudo dnf install R-CoprManager

# add the autoCRAN OBS repo (Tumbleweed) if it is missing, then install
zypper -q lr | grep -qi autoCRAN \
  || sudo zypper addrepo https://download.opensuse.org/repositories/devel:/languages:/R:/autoCRAN/openSUSE_Tumbleweed/devel:languages:R:autoCRAN.repo
sudo zypper install -y R-visOmopResults

RPMs auto-built from CRAN on openSUSE OBS (Tumbleweed). We list this channel from recorded autoCRAN download activity rather than from a live index of the repository, so treat it as last known rather than guaranteed.

Health

CRAN checks

13OK

CRAN check page ↗

Slowest check: 7.0 min · r-oldrel-windows-x86_64

Status changes

OK13 OK2026-08-04
NOTE12 OK, 1 NOTE2026-08-01
OK13 OK2026-06-09
ERROR12 OK, 1 ERROR2026-06-07
OK14 OK2026-03-10

Advisories

none known

How this is measured·How advisories are found

Documentation

In release 1.5.1

READMEYes · 298 wordsVignettesYes · 5 · dynamicNEWSYes · 100% structured · mentions 1.5.1Citation fileNoWebsiteYes · pkgdown

Help pages: 30 (4 internal)includes a package overview page
Examples that run: 100%24 run in a plain check
Exported functions with examples: 92%
Documented parameters: 96%
Return-value docs: 81%
Help pages citing references: 0%

Vignettes (5)

How these are measured

Downloads

12.9K

CRAN downloads in the past year

Rank #3,145 · ~35/day · ~1.1K/mo

Releases R versions

Daily download trend is not available in this view yet.

1.7K30 days

3.9K90 days

12.9K1 year

Compare downloads with other packages →

Also on360 r2u4 autocran

How downloads are counted

Repository

darwin-eu/visomopresults ↗Organization: darwin-eu

1Stars

0Forks

1Open issues

0Open PRs

14Releases

559Commits

5Commit identities

License file reads as Apache-2.0 · 559 commits · Last activity 2026-09-28 · 0% stars, 30d

Responsiveness

How these are sampled

PRs merged (all time): 90%
Median days to close, 50 most recently updated closed issues: 6
Median days to close, 50 most recently updated closed PRs: 0

Stars over time

2026-07-07 · 02026-08-20 · 1

How these are measured

PracticesBeta

11 development-tooling and community-health practices detected across 6 families in the upstream repository

Checks run against github.com/darwin-eu/visomopresults on 2026-10-11.

Continuous integration (2)

GitHub ActionsR CMD check workflow

The R CMD check workflow runs on Windows

Docs source (4)

README.Rmdpkgdown

GitHub Pages site last deployed 2026-09-28 · The repository has a site deploy workflow

pkgdown site last built 2026-09-28

Coverage (1)

Coverage reporting (Codecov)

CRAN release process (2)

cran-comments.mdCRAN-SUBMISSION

Show all practicesHide 2 practices

Lint, format, editor (1)

RStudio project

Git structural (1)

.gitattributes

How this is detected·Detection ruleset v3 (2026-09-26)

Dependencies

Declared dependencies

38 external dependencies (excludes base and recommended)

Installing visOmopResults adds 30 packages (16 with compiled code, 24 MB of source tarballs). Heaviest: stringi 11 MB, brand.yml 2.1 MB, jsonlite 1.0 MB.

Depends (1)

R >= 4.1

Imports (11)

brand.yml cli dplyr generics glue omopgenerics (>= 0.3.1)purrr rlang stringr systemfonts tidyr

LinkingTo (0)

none

Enhances (0)

none

Dependency license breakdown →

Reverse dependencies

0direct

0indirect

Suggested by 16

Show all 16 packagesHide all 16 packages

Suggests, most downloaded first

CodelistGenerator CohortConstructor CohortCharacteristics DrugUtilisation OmopSketch IncidencePrevalence CohortSurvival PhenotypeR TreatmentPatterns MeasurementDiagnostics PatientGenerator OmopConstructor OmopIndices CohortSymmetry CohortCosts CohortUtilisation

How these are counted

Code & Tests

Datasets

People & History

People (6)

Núria Mercadé-Besora

Author, Maintainer since 0.1.1 (2024)

Martí Català

Author · added in 0.4.0

Marta Alcalde-Herraiz

Contributor · added in 1.0.1

Edward Burn

Contributor · added in 0.5.0

Yuchen Guo

Contributor · added in 0.4.0

Elin Rowlands

Contributor · added in 0.5.0

Previously maintained by Marti Catala (0.0.1).

Listed in earlier versions (1)

Marti Catala

no longer listed · 0.0.1 to 0.3.0

Releases (21)

Pick two releases to compare their code metrics.

1.5.1Latest
record
2026-09-25 · current release · diff ↗
1.5.0
record
2026-05-18 · diff ↗ ·
added 1 export
alluvialPlot
R
R 4.6.0 released · 2026-04-24
1.4.2
record
2026-02-04 · diff ↗
1.4.1
record
2026-02-02 · diff ↗ ·
removed 1 export
requireExtrafont
1.4.0
record
2025-11-07 · diff ↗ ·
removed 1 export
tableStyleCode
1.3.1
record
2025-10-09 · diff ↗
1.3.0
record
2025-10-05 · diff ↗ ·
removed 1 export
themeDarwin

added 4 exports
plotStyle, plotType, requireExtrafont, tableStyleCode
1.2.0
record
2025-09-02 · diff ↗ ·
added 3 exports
setGlobalPlotOptions, setGlobalTableOptions, themeDarwin
1.1.1
record
2025-06-19 · diff ↗
1.1.0
record
2025-05-21 · diff ↗
R
R 4.5.0 released · 2025-04-11
1.0.2
record
2025-03-06 · diff ↗
1.0.1
record
2025-02-27 · diff ↗ ·
added 1 export
formatMinCellCount
1.0.0
record
2025-01-15 · diff ↗ ·
added 1 export
emptyPlot
0.5.1
record
2024-12-11 · diff ↗ ·
added 2 exports
plotColumns, tableColumns

Show 9 earlier eventsHide 9 earlier events

0.5.0
record
2024-11-24 · diff ↗ ·
removed 5 exports
fxTable, gtTable, optionsVisOmopTable, splitNameLevel, uniteNameLevel

added 3 exports
customiseText, emptyTable, themeVisOmop
0.4.0
record
2024-09-24 · diff ↗ ·
added 16 exports
barPlot, bind, boxPlot, exportSummarisedResult, filterAdditional, filterGroup, filterStrata, importSummarisedResult, scatterPlot, settingsColumns, suppress, tableOptions, tableStyle, tableType, tidyColumns, visTable
0.3.0
record
2024-05-02 · diff ↗ ·
removed 3 exports
appendSettings, optionsFormatTable, pivotSettings

added 4 exports
addSettings, filterSettings, optionsVisOmopTable, visOmopTable
R
R 4.4.0 released · 2024-04-24
0.2.1
record
2024-04-02 · diff ↗ ·
added 3 exports
appendSettings, pivotEstimates, pivotSettings
0.2.0
record
2024-03-21 · diff ↗ ·
added 1 export
optionsFormatTable
0.1.1
record
2024-03-13 · diff ↗ ·
added 3 exports
formatHeader, settings, tidy
0.0.1
record
2024-02-06
R
R 4.3.0 released · 2023-04-21

Package metadata

First published: 2024-02-06
Total releases: 21 / 2 yrs
License: Apache License (>= 2)
Minimum R: ≥ 4.1
Bundled data: 14 KB / 1 file
Download size: 2.7 MB

Cite

Cite this package

Run in R for the authors' preferred citation:

citation("visOmopResults")

Format

Mercadé-Besora, N., Alcalde-Herraiz, M., Burn, E., Català, M., Guo, Y., & Rowlands, E. (2026). visOmopResults: Graphs and Tables for OMOP Results (Version 1.5.1) [Computer software]. https://doi.org/10.32614/CRAN.package.visOmopResults

This package has no citation file, so citation() returns this entry built from DESCRIPTION.

Cite the R Observatory

For a number measured here: a download total, a coverage figure, an archival date.

Format

APA

Balamuta, J. J. (2026). R Observatory: Metrics for visOmopResults version 1.5.1 [Data set]. HJJB, LLC. Data release v2026-10-19. https://doi.org/10.5281/zenodo.21843040

From data release v2026-10-19, which the citation names so these numbers can be found later. More on citing and the projects behind them.

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