R Observatory: Metrics for PatientProfiles version 1.6.0

Balamuta, James Joseph

doi:10.5281/zenodo.21843040

PatientProfiles

1.6.0

Identify Characteristics of Patients in the OMOP Common Data Model

15packages depend

19.1Kdownloads / year

96.5%test coverage

13/13checks pass

Overview

About

Maintained by Martí CatalàFirst published 2023-05-0229 releasesCRAN page ↗GitHub ↗

Identify the characteristics of patients in data mapped to the Observational Medical Outcomes Partnership (OMOP) common data model.

Install

R (CRAN)pak (dev)Ubuntu (r2u)Fedora (COPR)openSUSE (OBS)

install.packages("PatientProfiles", repos = "https://cloud.r-project.org/")

Installs the current CRAN release. Prebuilt binaries on Windows and macOS.

if (!requireNamespace("pak", quietly = TRUE))
  install.packages("pak", repos = "https://cloud.r-project.org/")
pak::pak("darwin-eu/PatientProfiles")

Development version from darwin-eu/PatientProfiles. Installs pak first if it is not already available.

Release

# enable cranapt (r2u) if it is not already set up, then install
grep -rqs r2u.stat.illinois.edu /etc/apt/sources.list /etc/apt/sources.list.d/ \
  || curl -fsSL https://raw.githubusercontent.com/eddelbuettel/r2u/master/inst/scripts/add_cranapt_noble.sh | sudo bash
sudo apt install -y r-cran-patientprofiles

Fast Ubuntu binaries via r2u (no compilation). The cranapt setup runs once and is skipped when it is already enabled.

bspm (used by r2u) also needs make: sudo apt install make

# enable the iucar/cran COPR if it is not already present, then install
ls /etc/yum.repos.d/*iucar*cran*.repo >/dev/null 2>&1 \
  || sudo dnf copr enable -y iucar/cran
sudo dnf install -y R-CRAN-PatientProfiles

RPMs from the iucar/cran COPR, rebuilt from CRAN.

For install.packages() integration in R, also: sudo dnf install R-CoprManager

# add the autoCRAN OBS repo (Tumbleweed) if it is missing, then install
zypper -q lr | grep -qi autoCRAN \
  || sudo zypper addrepo https://download.opensuse.org/repositories/devel:/languages:/R:/autoCRAN/openSUSE_Tumbleweed/devel:languages:R:autoCRAN.repo
sudo zypper install -y R-PatientProfiles

RPMs auto-built from CRAN on openSUSE OBS (Tumbleweed).

Health

CRAN checks

13OK

Slowest check: 19.2 min · r-release-macos-x86_64

Code health

Yes

Tests · ratio 1.18

96.5%

Coverage · measured lines

100%

Documentation · exports

9

Dependencies · direct

Check history

OK2026-08-05
13 OK · 0 NOTE · 0 WARNING · 0 ERROR · 0 FAILURE
NOTE2026-08-01
12 OK · 1 NOTE · 0 WARNING · 0 ERROR · 0 FAILURE
OK2026-06-09
13 OK · 0 NOTE · 0 WARNING · 0 ERROR · 0 FAILURE
ERROR2026-06-08
12 OK · 0 NOTE · 0 WARNING · 1 ERROR · 0 FAILURE
OK2026-05-24
13 OK · 0 NOTE · 0 WARNING · 0 ERROR · 0 FAILURE

Show 4 earlier snapshots

ERROR2026-05-17
12 OK · 0 NOTE · 0 WARNING · 1 ERROR · 0 FAILURE
OK2026-05-15
13 OK · 0 NOTE · 0 WARNING · 0 ERROR · 0 FAILURE
ERROR2026-05-13
12 OK · 0 NOTE · 0 WARNING · 1 ERROR · 0 FAILURE
OK2026-03-10
14 OK · 0 NOTE · 0 WARNING · 0 ERROR · 0 FAILURE

Documentation

READMEYes · 505 wordsVignettesYes · dynamicpkgdown siteNoNEWSYes · 100% structuredCode of conductNoContributing guideNo

Examples that run: 0%
Documented parameters: 95%
Return-value docs: 96%
References docs: 0%

Downloads

19.1K

CRAN downloads in the past year

Rank #3,103 · ~52/day · ~1.6K/mo

Releases R versions

Daily download trend is not available in this view yet.

1.2K30 days

4K90 days

19.1K1 year

Compare downloads with other packages →

Also on519 r2u17 autocran

Repository

GitHub ↗ darwin-eu/patientprofiles

2Stars

1Forks

3Open issues

0Open PRs

11Releases

1,450Commits

14Contributors

License Apache-2.0 · 1,450 commits · Last activity 2026-08-05 · 0% stars, 30d

Stars over time

2024-12-01 · 12026-07-07 · 2

Repository practices

Upstream repositoryBeta

7 development-tooling and community-health practices detected across 6 families in the upstream repository

Checks run against github.com/darwin-eu/patientprofiles on 2026-08-16.

Continuous integration (1)

GitHub Actions

CRAN release process (2)

cran-comments.mdCRAN-SUBMISSION

Docs source (1)

README.Rmd

Lint, format, editor (1)

RStudio project

Show all practices

Coverage (1)

Codecov

Git structural (1)

.gitattributes

How this is detected·Detection ruleset v1 (2026-07-18)

Dependencies

Declared dependencies

34 external dependencies (excludes base and recommended)

Depends (1)

R >= 4.1.0

Imports (9)

cli clock dplyr lifecycle omopgenerics purrr rlang stringr tidyr

LinkingTo (0)

none

Suggests (25)

bit64 CDMConnector CodelistGenerator CohortConstructor covr DBI dbplyr DT duckdb ggplot2 glue gt here Hmisc knitr odbc omock patchwork rmarkdown RPostgres scales spelling testthat (>= 3.1.5)tictoc withr

Enhances (0)

none

Dependency license breakdown →

Reverse dependencies

15direct

2indirect

CodelistGenerator CohortCharacteristics CohortConstructor CohortSurvival CohortSymmetry DrugUtilisation IncidencePrevalence MeasurementDiagnostics OmopConstructor OmopSketch PhenotypeR CohortContrast OmopViewer omock visOmopResults

Code & Tests

People & History

People (8)

Maintainer (1)

Martí Català

Author, Maintainer · added in 1.4.2

Authors (6)

Martí Català

Author, Maintainer · added in 1.4.2

Author

Author

Author

Author

Author

Contributors (2)

Xihang Chen

Contributor · added in 1.0.0

Xintong Li

Contributor

Listed in earlier versions (1)

Marti Catala

no longer listed · 0.1.0 to 1.4.1

Package Timeline

29 releases. Pick two to compare their code metrics. R releases are shown for context.

1.6.0Latest
2026-07-25 · current release · diff ↗
R
R 4.6.0 released · 2026-04-24
1.5.0
2026-02-24 · diff ↗
1.4.5
2026-01-21 · diff ↗
1.4.4
2025-10-29 · diff ↗
1.4.3
2025-10-01 · diff ↗
1.4.2
2025-07-09 · diff ↗
1.4.1
2025-06-27 · diff ↗
1.4.0
2025-05-30 · diff ↗
R
R 4.5.0 released · 2025-04-11
1.3.1
2025-03-05 · diff ↗
1.3.0
2025-02-26 · diff ↗
1.2.3
2024-12-12 · diff ↗
1.2.2
2024-11-28 · diff ↗
1.2.1
2024-10-25 · diff ↗
1.2.0
2024-09-12 · diff ↗

Show 17 earlier events

1.1.1
2024-07-28 · diff ↗
1.1.0
2024-06-11 · diff ↗
1.0.0
2024-05-16 · diff ↗
R
R 4.4.0 released · 2024-04-24
0.8.0
2024-04-11 · diff ↗
0.7.0
2024-03-28 · diff ↗
0.6.2
2024-03-05 · diff ↗
0.6.1
2024-02-22 · diff ↗
0.6.0
2024-02-08 · diff ↗
0.5.1
2023-11-21 · diff ↗
0.5.0
2023-11-13 · diff ↗
0.4.0
2023-10-06 · diff ↗
0.3.1
2023-08-25 · diff ↗
0.3.0
2023-07-18 · diff ↗
0.2.0
2023-06-14 · diff ↗
0.1.0
2023-05-02
R
R 4.3.0 released · 2023-04-21

Package metadata

First published: 2023-05-02
Total releases: 29 / 3 yrs
License: Apache License (>= 2)
Minimum R: ≥ 4.1.0
Download size: 951 KB
Installed size: not tracked yet
With dependencies: not tracked yet

Cite

Cite this package

Run in R for the authors' preferred citation:

citation("PatientProfiles")

Format

Català, M., Burn, E., Chen, X., Du, M., Guo, Y., Li, X., Lopez-Guell, K., & Mercade-Besora, N. (2026). PatientProfiles: Identify Characteristics of Patients in the OMOP Common Data Model (Version 1.6.0) [Computer software]. https://doi.org/10.32614/CRAN.package.PatientProfiles

This is what citation() produces when a package has no citation file of its own. If it prints something else, use that.

Cite the R Observatory

For a number measured here: a download total, a coverage figure, an archival date.

Format

APA

Balamuta, J. J. (2026). R Observatory: Metrics for PatientProfiles version 1.6.0 [Data set]. HJJB, LLC. Data release v2026-08-16. https://doi.org/10.5281/zenodo.21843040

From data release v2026-08-16, which the citation names so these numbers can be found later. More on citing and the projects behind them.

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