R Observatory: Metrics for CodelistGenerator version 4.1.0

Balamuta, James Joseph

doi:10.5281/zenodo.21843040

CodelistGenerator

4.1.0

Identify Relevant Clinical Codes and Evaluate Their Use

10packages depend

15.1Kdownloads / year

86.8%test coverage

13/13checks pass

Overview

About

Maintained by Edward BurnFirst published 2023-02-0729 releasesCRAN page ↗GitHub ↗

Generate a candidate code list for the Observational Medical Outcomes Partnership (OMOP) common data model based on string matching. For a given search strategy, a candidate code list will be returned.

Install

R (CRAN)pak (dev)Ubuntu (r2u)Fedora (COPR)openSUSE (OBS)

install.packages("CodelistGenerator", repos = "https://cloud.r-project.org/")

Installs the current CRAN release. Prebuilt binaries on Windows and macOS.

if (!requireNamespace("pak", quietly = TRUE))
  install.packages("pak", repos = "https://cloud.r-project.org/")
pak::pak("darwin-eu/CodelistGenerator")

Development version from darwin-eu/CodelistGenerator. Installs pak first if it is not already available.

Release

# enable cranapt (r2u) if it is not already set up, then install
grep -rqs r2u.stat.illinois.edu /etc/apt/sources.list /etc/apt/sources.list.d/ \
  || curl -fsSL https://raw.githubusercontent.com/eddelbuettel/r2u/master/inst/scripts/add_cranapt_noble.sh | sudo bash
sudo apt install -y r-cran-codelistgenerator

Fast Ubuntu binaries via r2u (no compilation). The cranapt setup runs once and is skipped when it is already enabled.

bspm (used by r2u) also needs make: sudo apt install make

# enable the iucar/cran COPR if it is not already present, then install
ls /etc/yum.repos.d/*iucar*cran*.repo >/dev/null 2>&1 \
  || sudo dnf copr enable -y iucar/cran
sudo dnf install -y R-CRAN-CodelistGenerator

RPMs from the iucar/cran COPR, rebuilt from CRAN.

For install.packages() integration in R, also: sudo dnf install R-CoprManager

# add the autoCRAN OBS repo (Tumbleweed) if it is missing, then install
zypper -q lr | grep -qi autoCRAN \
  || sudo zypper addrepo https://download.opensuse.org/repositories/devel:/languages:/R:/autoCRAN/openSUSE_Tumbleweed/devel:languages:R:autoCRAN.repo
sudo zypper install -y R-CodelistGenerator

RPMs auto-built from CRAN on openSUSE OBS (Tumbleweed).

Health

CRAN checks

13OK

Slowest check: 24.6 min · r-oldrel-macos-x86_64

Code health

Yes

Tests · ratio 0.63

86.8%

Coverage · measured lines

100%

Documentation · exports

14

Dependencies · direct

Check history

OK2026-08-05
11 OK · 0 NOTE · 0 WARNING · 0 ERROR · 2 FAILURE
NOTE2026-08-03
10 OK · 1 NOTE · 0 WARNING · 0 ERROR · 2 FAILURE
ERROR2026-08-02
9 OK · 1 NOTE · 0 WARNING · 1 ERROR · 2 FAILURE
NOTE2026-08-01
12 OK · 1 NOTE · 0 WARNING · 0 ERROR · 0 FAILURE
OK2026-06-09
13 OK · 0 NOTE · 0 WARNING · 0 ERROR · 0 FAILURE

Show 8 earlier snapshots

ERROR2026-06-08
12 OK · 0 NOTE · 0 WARNING · 1 ERROR · 0 FAILURE
OK2026-05-24
13 OK · 0 NOTE · 0 WARNING · 0 ERROR · 0 FAILURE
ERROR2026-05-17
12 OK · 0 NOTE · 0 WARNING · 1 ERROR · 0 FAILURE
OK2026-05-15
13 OK · 0 NOTE · 0 WARNING · 0 ERROR · 0 FAILURE
ERROR2026-05-13
12 OK · 0 NOTE · 0 WARNING · 1 ERROR · 0 FAILURE
OK2026-05-02
13 OK · 0 NOTE · 0 WARNING · 0 ERROR · 0 FAILURE
ERROR2026-04-25
11 OK · 0 NOTE · 0 WARNING · 1 ERROR · 0 FAILURE
OK2026-03-10
14 OK · 0 NOTE · 0 WARNING · 0 ERROR · 0 FAILURE

Documentation

READMEYes · 242 wordsVignettesYes · dynamicpkgdown siteNoNEWSYes · 100% structuredCode of conductNoContributing guideNo

Examples that run: 0%
Documented parameters: 98%
Return-value docs: 98%
References docs: 0%

Downloads

15.1K

CRAN downloads in the past year

Rank #3,245 · ~41/day · ~1.3K/mo

Releases R versions

Daily download trend is not available in this view yet.

1.1K30 days

3.6K90 days

15.1K1 year

Compare downloads with other packages →

Also on405 r2u14 autocran

Repository

GitHub ↗ darwin-eu/codelistgenerator

18Stars

9Forks

13Open issues

0Open PRs

25Releases

460Commits

9Contributors

460 commits · Last activity 2026-08-01 · 0% stars, 30d

Stars over time

2025-07-16 · 162026-07-07 · 18

Repository practices

Upstream repositoryBeta

8 development-tooling and community-health practices detected across 7 families in the upstream repository

Checks run against github.com/darwin-eu/codelistgenerator on 2026-08-09.

Continuous integration (1)

GitHub Actions

Reproducibility and dev environment (1)

data-raw/

CRAN release process (2)

cran-comments.mdCRAN-SUBMISSION

Docs source (1)

README.Rmd

Show all practices

Lint, format, editor (1)

RStudio project

Coverage (1)

Codecov

Governance and community (1)

Issue templates

How this is detected·Detection ruleset v1 (2026-07-18)

Dependencies

Declared dependencies

32 external dependencies (excludes base and recommended)

Depends (1)

R >= 4.1

Imports (14)

cli clock DBI dplyr glue lifecycle omopgenerics PatientProfiles purrr rlang stringi stringr tidyr vctrs

LinkingTo (0)

none

Suggests (18)

omock covr duckdb CDMConnector visOmopResults CohortConstructor jsonlite knitr rmarkdown testthat RPostgres odbc openxlsx spelling tibble gt flextable tictoc

Enhances (0)

none

Dependency license breakdown →

Reverse dependencies

10direct

4indirect

CohortConstructor CohortSymmetry DrugUtilisation PhenotypeR CohortCharacteristics CohortSurvival MeasurementDiagnostics OmopSketch OmopViewer PatientProfiles

Code & Tests

Datasets

People & History

People (7)

Maintainer (1)

Edward Burn

Author, Maintainer

Authors (7)

Edward Burn

Author, Maintainer

Marta Alcalde-Herraiz

Author · added in 3.4.1

Martí Català

Author · added in 4.0.0

Xihang Chen

Author · added in 3.0

Mike Du

Author · added in 3.1.0

Nuria Mercade-Besora

Author · added in 3.2.0

Danielle Newby

Author · added in 3.1.0

Listed in earlier versions (1)

Marti Catala

no longer listed · 1.6.0 to 3.5.0

Package Timeline

29 releases. Pick two to compare their code metrics. R releases are shown for context.

4.1.0Latest
2026-08-01 · current release · diff ↗
R
R 4.6.0 released · 2026-04-24
4.0.2
2026-01-19 · diff ↗
4.0.1
2026-01-08 · diff ↗
4.0.0
2025-12-17 · diff ↗
R
R 4.5.0 released · 2025-04-11
3.5.0
2025-04-10 · diff ↗
3.4.1
2025-03-26 · diff ↗
3.4.0
2025-02-19 · diff ↗
3.3.2
2025-01-28 · diff ↗
3.3.1
2024-11-26 · diff ↗
3.3.0
2024-11-11 · diff ↗
3.2.1
2024-10-17 · diff ↗
3.2.0
2024-09-25 · diff ↗
3.1.0
2024-07-12 · diff ↗
3.0
2024-05-31 · diff ↗

Show 20 earlier events

R
R 4.4.0 released · 2024-04-24
2.2.3
2024-03-08 · diff ↗
2.2.2
2024-02-14 · diff ↗
2.2.1
2024-02-07 · diff ↗
2.2.0
2024-01-25 · diff ↗
unarchivedReturned to CRAN
2024-01-25
archivedRemoved from CRAN
2024-01-14
issues were not corrected in time Does not use 'arrow' conditionally
2.1.1
2023-11-20 · diff ↗
2.1.0
2023-11-17 · diff ↗
2.0.0
2023-10-09 · diff ↗
1.7.0
2023-08-16 · diff ↗
1.6.0
2023-07-07 · diff ↗
1.5.0
2023-06-13 · diff ↗
1.4.0
2023-06-06 · diff ↗
1.3.0
2023-05-31 · diff ↗
1.2.0
2023-05-04 · diff ↗
R
R 4.3.0 released · 2023-04-21
1.1.0
2023-04-01 · diff ↗
1.0.0
2023-02-07
R
R 4.2.0 released · 2022-04-22

Package metadata

First published: 2023-02-07
Total releases: 29 / 3 yrs
License: Apache License (>= 2)
Minimum R: ≥ 4.1
Bundled data: 2.4 KB / 1 file
Download size: 3.0 MB
Installed size: not tracked yet
With dependencies: not tracked yet

Cite

Cite this package

Run in R for the authors' preferred citation:

citation("CodelistGenerator")

Format

Burn, E., Alcalde-Herraiz, M., Català, M., Chen, X., Du, M., Mercade-Besora, N., & Newby, D. (2026). CodelistGenerator: Identify Relevant Clinical Codes and Evaluate Their Use (Version 4.1.0) [Computer software]. https://doi.org/10.32614/CRAN.package.CodelistGenerator

This is what citation() produces when a package has no citation file of its own. If it prints something else, use that.

Cite the R Observatory

For a number measured here: a download total, a coverage figure, an archival date.

Format

APA

Balamuta, J. J. (2026). R Observatory: Metrics for CodelistGenerator version 4.1.0 [Data set]. HJJB, LLC. Data release v2026-08-15. https://doi.org/10.5281/zenodo.21843040

From data release v2026-08-15, which the citation names so these numbers can be found later. More on citing and the projects behind them.

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