R Observatory: Metrics for OmopSketch version 1.1.1

Balamuta, James Joseph

doi:10.5281/zenodo.21843040

OmopSketch

1.1.1Package record

Characterise Tables of an OMOP Common Data Model Instance

1packages dependsuggested by 3

8.3Kdownloads / year

–test coverage

12/13flavors OK

Overview

About

Maintained by Cecilia CampanileCRAN page ↗GitHub ↗Website ↗Issues ↗

Summarises key information in data mapped to the Observational Medical Outcomes Partnership (OMOP) common data model. Assess suitability to perform specific epidemiological studies and explore the different domains to obtain feasibility counts and trends.

Changes in 1.1.1

get concept types from cdm\$concept by @cecicampanile in #604
handle years that are not 4 digits by @cecicampanile in #608
update trimStudyPeriod() by @KimLopezGuell in #611

From NEWS.md in the release

Install

R (CRAN)pak (dev)Ubuntu (r2u)Fedora (COPR)openSUSE (OBS)

install.packages("OmopSketch", repos = "https://cloud.r-project.org/")

Installs the current CRAN release. Prebuilt binaries on Windows and macOS.

if (!requireNamespace("pak", quietly = TRUE))
  install.packages("pak", repos = "https://cloud.r-project.org/")
pak::pak("OHDSI/OmopSketch")

Development version from OHDSI/OmopSketch. Installs pak first if it is not already available.

Release

# enable cranapt (r2u) if it is not already set up, then install
grep -rqs r2u.stat.illinois.edu /etc/apt/sources.list /etc/apt/sources.list.d/ \
  || curl -fsSL https://raw.githubusercontent.com/eddelbuettel/r2u/master/inst/scripts/add_cranapt_noble.sh | sudo bash
sudo apt install -y r-cran-omopsketch

Fast Ubuntu binaries via r2u (no compilation). The cranapt setup runs once and is skipped when it is already enabled. We list this channel from recorded r2u download activity rather than from a live index of the repository, so treat it as last known rather than guaranteed.

bspm (used by r2u) also needs make: sudo apt install make

# enable the iucar/cran COPR if it is not already present, then install
ls /etc/yum.repos.d/*iucar*cran*.repo >/dev/null 2>&1 \
  || sudo dnf copr enable -y iucar/cran
sudo dnf install -y R-CRAN-OmopSketch

RPMs from the iucar/cran COPR, rebuilt from CRAN.

For install.packages() integration in R, also: sudo dnf install R-CoprManager

# add the autoCRAN OBS repo (Tumbleweed) if it is missing, then install
zypper -q lr | grep -qi autoCRAN \
  || sudo zypper addrepo https://download.opensuse.org/repositories/devel:/languages:/R:/autoCRAN/openSUSE_Tumbleweed/devel:languages:R:autoCRAN.repo
sudo zypper install -y R-OmopSketch

RPMs auto-built from CRAN on openSUSE OBS (Tumbleweed). We list this channel from recorded autoCRAN download activity rather than from a live index of the repository, so treat it as last known rather than guaranteed.

Health

CRAN checks

1FAILURE12OK

Check messages

FAILUREpackage dependenciesr-devel-linux-x86_64-fedora-clang

CRAN check page ↗

Slowest check: 8.1 min · r-oldrel-windows-x86_64

Status changes

FAILURE12 OK, 1 FAILURENow
OK13 OK2026-09-30
ERROR12 OK, 1 ERROR2026-09-04
OK13 OK2026-08-05
NOTE12 OK, 1 NOTE2026-08-01
OK13 OK2026-06-09

Show 8 earlier changesHide 8 earlier changes

ERROR12 OK, 1 ERROR2026-06-08
OK13 OK2026-05-24
ERROR12 OK, 1 ERROR2026-05-17
OK13 OK2026-05-15
ERROR12 OK, 1 ERROR2026-05-13
OK13 OK2026-05-02
ERROR11 OK, 1 ERROR2026-04-25
OK14 OK2026-03-10

Advisories

none known

How this is measured·How advisories are found

Documentation

In release 1.1.1

READMEYes · 494 wordsVignettesYes · 1 · dynamicNEWSYes · 100% structured · mentions 1.1.1Citation fileNoWebsiteYes · pkgdown

Help pages: 37 (6 internal)includes a package overview page
Examples that run: 4%1 run in a plain check · 24 only when donttest examples are enabled (R CMD check --as-cran) · 2 never run
Exported functions with examples: 84%
Documented parameters: 97%
Return-value docs: 97%
Help pages citing references: 0%

Vignettes (1)

database characteristics

How these are measured

Downloads

8.3K

CRAN downloads in the past year

Rank #3,521 · ~23/day · ~691/mo

Releases R versions

Daily download trend is not available in this view yet.

90530 days

3K90 days

8.3K1 year

Compare downloads with other packages →

Also on220 r2u4 autocran

How downloads are counted

Repository

ohdsi/omopsketch ↗Organization: OHDSI

5Stars

4Forks

10Open issues

1Open PRs

14Releases

1,336Commits

8Commit identities

License file reads as Apache-2.0 · 1,336 commits · Last activity 2026-09-30 · 0% stars, 30d

Responsiveness

How these are sampled

PRs merged (all time): 97%
Median days to close, 50 most recently updated closed issues: 14
Median days to close, 50 most recently updated closed PRs: 3

Stars over time

2025-04-11 · 32026-09-17 · 5

How these are measured

PracticesBeta

11 development-tooling and community-health practices detected across 7 families in the upstream repository

Checks run against github.com/ohdsi/omopsketch on 2026-10-22.

Continuous integration (2)

GitHub ActionsR CMD check workflow

The R CMD check workflow runs on Linux

Docs source (4)

README.Rmdpkgdown

GitHub Pages site last deployed 2026-09-30 · The repository has a site deploy workflow

pkgdown site last built 2026-09-30

Coverage (1)

Coverage reporting (Codecov)

Reproducibility and dev environment (1)

data-raw/

Show all practicesHide 3 practices

CRAN release process (1)

cran-comments.md

Lint, format, editor (1)

RStudio project

Git structural (1)

.gitattributes

How this is detected·Detection ruleset v4 (2026-10-20)

Dependencies

Declared dependencies

40 external dependencies (excludes base and recommended)

Installing OmopSketch adds 30 packages (14 with compiled code, 26 MB of source tarballs). Heaviest: stringi 11 MB, CodelistGenerator 3.1 MB, CohortConstructor 1.0 MB.

Depends (1)

R >= 4.2.0

Imports (12)

cli clock CohortConstructor dplyr lifecycle omopgenerics PatientProfiles purrr rlang stringr tibble tidyr

LinkingTo (0)

none

Enhances (0)

none

Dependency license breakdown →

Reverse dependencies

1direct

0indirect

Imports 1

Suggested by 3

Depends, Imports or LinkingTo, most downloaded first

PhenotypeR

Suggests, most downloaded first

OmopConstructor OmopViewer OmopOnSpark

How these are counted

Code & Tests

People & History

People (6)

Cecilia Campanile

Author, Maintainer since 0.2.0 (2025) · added in 0.2.0

Marta Alcalde-Herraiz

Author

Author

Author

Author

Author

Previously maintained by Marta Alcalde-Herraiz (0.1.0 to 0.1.2).

Releases (16)

Pick two releases to compare their code metrics.

1.1.1Latest
record
2026-08-27 · current release · diff ↗
1.1.0
record
2026-06-16 · diff ↗
R
R 4.6.0 released · 2026-04-24
1.0.1
record
2026-02-06 · diff ↗
1.0.0
record
2025-11-19 · diff ↗ ·
added 7 exports
clinicalTables, plotPerson, plotTrend, summarisePerson, summariseTrend, tablePerson, tableTrend
0.5.1
record
2025-06-19 · diff ↗
0.5.0
record
2025-06-18 · diff ↗ ·
added 2 exports
shinyCharacteristics, tableTopConceptCounts
0.4.0
record
2025-05-15 · diff ↗ ·
added 3 exports
databaseCharacteristics, tableInObservation, tableRecordCount
0.3.2
record
2025-04-14 · diff ↗
R
R 4.5.0 released · 2025-04-11
0.3.1
record
2025-03-17 · diff ↗
0.3.0
record
2025-03-04 · diff ↗
0.2.2
record
2025-01-28 · diff ↗
0.2.1
record
2025-01-16 · diff ↗
0.2.0
record
2025-01-08 · diff ↗ ·
removed 3 exports
plotConceptCounts, summarisePopulationCharacteristics, tablePopulationCharacteristics

added 6 exports
plotConceptSetCounts, summariseConceptIdCounts, summariseConceptSetCounts, summariseMissingData, tableConceptIdCounts, tableMissingData
0.1.2
record
2024-11-12 · diff ↗

Show 5 earlier eventsHide 5 earlier events

0.1.1
record
2024-10-16 · diff ↗
unarchivedReturned to CRAN
2024-10-15
archivedRemoved from CRAN
2024-10-14
issues were not corrected in time
0.1.0
record
2024-09-26
R
R 4.4.0 released · 2024-04-24

Package metadata

First published: 2024-09-26
Total releases: 16 / 2 yrs
License: Apache License (>= 2)
Minimum R: ≥ 4.2.0
Download size: 2.1 MB

Cite

Cite this package

Run in R for the authors' preferred citation:

citation("OmopSketch")

Format

Campanile, C., Alcalde-Herraiz, M., Burn, E., Català, M., Lopez-Guell, K., & Rowlands, E. (2026). OmopSketch: Characterise Tables of an OMOP Common Data Model Instance (Version 1.1.1) [Computer software]. https://doi.org/10.32614/CRAN.package.OmopSketch

This package has no citation file, so citation() returns this entry built from DESCRIPTION.

Cite the R Observatory

For a number measured here: a download total, a coverage figure, an archival date.

Format

APA

Balamuta, J. J. (2026). R Observatory: Metrics for OmopSketch version 1.1.1 [Data set]. HJJB, LLC. Data release v2026-10-24. https://doi.org/10.5281/zenodo.21843040

From data release v2026-10-24, which the citation names so these numbers can be found later. More on citing and the projects behind them.

Report a problem with this page →