R Observatory: Metrics for CohortUtilisation version 0.6.1

Balamuta, James Joseph

doi:10.5281/zenodo.21843040

CohortUtilisation

0.6.1Package record

Healthcare Resource Utilization on OMOP CDM Cohorts

0packages depend

575downloads / year

90.6%test coverage

13/13flavors OK

Overview

About

Maintained by Gabriel MaeztuCRAN page ↗GitHub ↗Website ↗Issues ↗

In-database healthcare resource utilization (HCRU) extraction across inpatient, emergency, outpatient, pharmacy, and procedure domains for Observational Medical Outcomes Partnership (OMOP) Common Data Model (CDM) cohorts following DARWIN EU standards.

Install

R (CRAN)pak (dev)Ubuntu (r2u)Fedora (COPR)openSUSE (OBS)

install.packages("CohortUtilisation", repos = "https://cloud.r-project.org/")

Installs the current CRAN release. Prebuilt binaries on Windows and macOS.

if (!requireNamespace("pak", quietly = TRUE))
  install.packages("pak", repos = "https://cloud.r-project.org/")
pak::pak("iomedhealth/omopHeor")

Development version from iomedhealth/omopHeor. Installs pak first if it is not already available.

Release

# enable cranapt (r2u) if it is not already set up, then install
grep -rqs r2u.stat.illinois.edu /etc/apt/sources.list /etc/apt/sources.list.d/ \
  || curl -fsSL https://raw.githubusercontent.com/eddelbuettel/r2u/master/inst/scripts/add_cranapt_noble.sh | sudo bash
sudo apt install -y r-cran-cohortutilisation

Fast Ubuntu binaries via r2u (no compilation). The cranapt setup runs once and is skipped when it is already enabled. We list this channel from recorded r2u download activity rather than from a live index of the repository, so treat it as last known rather than guaranteed.

bspm (used by r2u) also needs make: sudo apt install make

# enable the iucar/cran COPR if it is not already present, then install
ls /etc/yum.repos.d/*iucar*cran*.repo >/dev/null 2>&1 \
  || sudo dnf copr enable -y iucar/cran
sudo dnf install -y R-CRAN-CohortUtilisation

RPMs from the iucar/cran COPR, rebuilt from CRAN.

For install.packages() integration in R, also: sudo dnf install R-CoprManager

# add the autoCRAN OBS repo (Tumbleweed) if it is missing, then install
zypper -q lr | grep -qi autoCRAN \
  || sudo zypper addrepo https://download.opensuse.org/repositories/devel:/languages:/R:/autoCRAN/openSUSE_Tumbleweed/devel:languages:R:autoCRAN.repo
sudo zypper install -y R-CohortUtilisation

RPMs auto-built from CRAN on openSUSE OBS (Tumbleweed). We list this channel from recorded autoCRAN download activity rather than from a live index of the repository, so treat it as last known rather than guaranteed.

Health

CRAN checks

13OK

CRAN check page ↗

Slowest check: 6.4 min · r-oldrel-windows-x86_64

Status changes

OK13 OK2026-09-30
ERROR10 OK, 1 ERROR2026-09-04
OK8 OK2026-08-31

Advisories

none known

How this is measured·How advisories are found

Documentation

In release 0.6.1

READMENoVignettesNoNEWSNoCitation fileNoWebsiteYes

Help pages: 12 (1 internal)includes a package overview page
Examples that run: no examples
Exported functions with examples: 0%
Documented parameters: 86%
Return-value docs: 100%
Help pages citing references: 0%

How these are measured

Downloads

575

CRAN downloads in the past year

Rank #22,805 · ~2/day · ~48/mo

Releases R versions

Daily download trend is not available in this view yet.

30830 days

57590 days

5751 year

Compare downloads with other packages →

Also on10 r2u11 autocran

How downloads are counted

Repository

iomedhealth/omopheor ↗Organization: iomedhealth

1Stars

0Forks

16Open issues

0Open PRs

4Releases

98Commits

1Commit identities

heorhtaohdsiomopomop-cdmrwehcru

98 commits · Last activity 2026-08-31

Responsiveness

How these are sampled

PRs merged (all time): not measured
Median days to close, 50 most recently updated closed issues: 5
Median days to close, 50 most recently updated closed PRs: not measured

Commits over time

2026-09-06 · 982026-09-15 · 98

How these are measured

PracticesBeta

8 development-tooling and community-health practices detected across 5 families in the upstream repository

Checks run against github.com/iomedhealth/omopheor on 2026-10-18.

Continuous integration (2)

GitHub ActionsR CMD check workflow

The R CMD check workflow runs on Linux

Governance and community (1)

Contributing guide

Docs source (3)

pkgdown

GitHub Pages site last deployed 2026-08-31 · The repository has a site deploy workflow

Reproducibility and dev environment (1)

Makefile

Show all practicesHide 1 practice

CRAN release process (1)

cran-comments.md

How this is detected·Detection ruleset v3 (2026-09-26)

AI coding toolsBeta

This repository shows signs of AI coding tools.

OpenCodefirst seen 2026-08-12
Seen in the repository: .opencode
Named in .Rbuildignore: .opencode

Shared conventions any agent may read, so they name no particular tool.

Seen in the repository: AGENTS.md

How this is detected·Detection ruleset v4 (updated 2026-09-27)

Dependencies

Declared dependencies

18 external dependencies (excludes base and recommended)

Installing CohortUtilisation adds 53 packages (27 with compiled code, 40 MB of source tarballs). Heaviest: stringi 11 MB, ggplot2 6.0 MB, CDMConnector 4.0 MB.

Depends (1)

R >= 4.1.0

Imports (8)

CDMConnector omopgenerics dbplyr (>= 2.4.0)dplyr ggplot2 rlang cli glue

LinkingTo (0)

none

Suggests (10)

DBI tibble gt PatientProfiles CohortConstructor CohortCharacteristics visOmopResults duckdb testthat withr

Enhances (0)

none

Dependency license breakdown →

Reverse dependencies

0direct

0indirect

Nothing depends on this yet.

How these are counted

Code & Tests

People & History

People (1)

Gabriel Maeztu

Author, Maintainer since 0.6.1 (2026)

Releases (1)

0.6.1Latest
record
2026-08-30 · current release
R
R 4.6.0 released · 2026-04-24

Package metadata

First published: 2026-08-30
Total releases: 1 / 1 yrs
License: MIT + file LICENSE OSI
Copyright: IOMED, S.L.
Minimum R: ≥ 4.1.0
Download size: 21 KB

Cite

Cite this package

Run in R for the authors' preferred citation:

citation("CohortUtilisation")

Format

Maeztu, G. (2026). CohortUtilisation: Healthcare Resource Utilization on OMOP CDM Cohorts (Version 0.6.1) [Computer software]. https://doi.org/10.32614/CRAN.package.CohortUtilisation

This package has no citation file, so citation() returns this entry built from DESCRIPTION.

Cite the R Observatory

For a number measured here: a download total, a coverage figure, an archival date.

Format

APA

Balamuta, J. J. (2026). R Observatory: Metrics for CohortUtilisation version 0.6.1 [Data set]. HJJB, LLC. Data release v2026-10-22. https://doi.org/10.5281/zenodo.21843040

From data release v2026-10-22, which the citation names so these numbers can be found later. More on citing and the projects behind them.

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