Q3 2013 in CRAN

Part of 2013.

Final

142

New packages

718

Updated

Archived

6.4M

Downloads

New packages (60+)

TAM Test Analysis Modules	2013-07-01
tester Tests and Checks Characteristics of R Objects	2013-07-01
abundant High-Dimensional Principal Fitted Components and Abundant Regression	2013-07-03
gsalib Utility Functions for 'GATK'	2013-07-03
scoring Proper Scoring Rules	2013-07-03
flora Tools for Interacting with the Brazilian Flora 2020	2013-07-04
rvHPDT Calling Haplotype-Based and Variant-Based Pedigree Disequilibrium Test for Rare Variants in Pedigrees	2013-07-04
ssfit Fitting of Parametric Models using Summary Statistics	2013-07-04
TriMatch Propensity Score Matching of Non-Binary Treatments	2013-07-05
ltsk Local Time Space Kriging	2013-07-05
MissMech Testing Homoscedasticity, Multivariate Normality, and Missing Completely at Random	2013-07-06
evmix Extreme Value Mixture Modelling, Threshold Estimation and Boundary Corrected Kernel Density Estimation	2013-07-06
prevalence Tools for Prevalence Assessment Studies	2013-07-06
RadOnc Analytical Tools for Radiation Oncology	2013-07-07
pumilioR Pumilio in R	2013-07-08
EnvNicheR Niche Estimation	2013-07-09
highr Syntax Highlighting for R Source Code	2013-07-09
ipfp Fast Implementation of the Iterative Proportional Fitting Procedure in C	2013-07-09
AUC Threshold Independent Performance Measures for Probabilistic Classifiers	2013-07-10
splusTimeDate Times and Dates from 'S-PLUS'	2013-07-10
splusTimeSeries Time Series from 'S-PLUS'	2013-07-10
DistatisR DiSTATIS Three Way Metric Multidimensional Scaling	2013-07-11
YPmodel The Short-Term and Long-Term Hazard Ratio Model for Survival Data	2013-07-11
flexCWM Flexible Cluster-Weighted Modeling	2013-07-11
geostatsp Geostatistical Modelling with Likelihood and Bayes	2013-07-12
BayesCR Bayesian Analysis of Censored Regression Models Under Scale Mixture of Skew Normal Distributions	2013-07-13
gpk 100 Data Sets for Statistics Education	2013-07-14
RND Risk Neutral Density Extraction Package	2013-07-15
coneproj Primal or Dual Cone Projections with Routines for Constrained Regression	2013-07-15
straweib Stratified Weibull Regression Model	2013-07-15
turner Turn Vectors and Lists of Vectors into Indexed Structures	2013-07-15
FinCal Time Value of Money, Time Series Analysis and Computational Finance	2013-07-16
ssmrob Robust Estimation and Inference in Sample Selection Models	2013-07-16
FastRCS Fits the FastRCS Robust Multivariable Linear Regression Model	2013-07-17
acopula Modelling Dependence with Multivariate Archimax (or any User-Defined Continuous) Copulas	2013-07-17
memuse Memory Estimation Utilities	2013-07-17
smaa Stochastic Multi-Criteria Acceptability Analysis	2013-07-18
psidR Build Panel Data Sets from PSID Raw Data	2013-07-22
MCMC.qpcr Bayesian Analysis of qRT-PCR Data	2013-07-23
StrainRanking Ranking of Pathogen Strains	2013-07-23
effsize Efficient Effect Size Computation	2013-07-23
fdatest Interval Testing Procedure for Functional Data	2013-07-23
neuroblastoma Neuroblastoma Copy Number Profiles	2013-07-23
ngramr Retrieve and Plot Google n-Gram Data	2013-07-23
scar Shape-Constrained Additive Regression: a Maximum Likelihood Approach	2013-07-23
RANN Fast Nearest Neighbour Search (Wraps ANN Library) Using L2 Metric	2013-07-24
netmeta Network Meta-Analysis using Frequentist Methods	2013-07-24
MODISTools Interface to the 'MODIS Land Products Subsets' Web Services	2013-07-26
RInSp R Individual Specialization	2013-07-26
pwt8 Penn World Table (Version 8.x)	2013-07-28
simPH Simulate and Plot Estimates from Cox Proportional Hazards Models	2013-07-28
NCmisc Miscellaneous Functions for Creating Adaptive Functions and Scripts	2013-07-29
naturalsort Natural Ordering	2013-07-30
phyloTop Calculating Topological Properties of Phylogenies	2013-07-30
BEDASSLE Quantifies Effects of Geo/Eco Distance on Genetic Differentiation	2013-07-31
textometry Textual Data Analysis Package Used by the TXM Software	2013-07-31
SCGLR Supervised Component Generalized Linear Regression	2013-08-01
rbmn Handling Linear Gaussian Bayesian Networks	2013-08-01
LPmerge Merging Linkage Maps by Linear Programming	2013-08-04
nlmeU Functions and Data Supporting 'Linear Mixed-Effects Models: A Step-by-Step Approach'	2013-08-04

Archived / removed

Why

8 reason not recorded
4 the request of the maintainer
3 use of non-portable x11() etc in examples
2 Fortran array bound errors were not corrected despite several reminders
2 the maintainer address bounces
1 : it was never updated from 'igraph0' to 'igraph' despite several reminders
1 This package is now available from Bioconductor 3.0 and later, only
1 This was a transitional package from Mar 2012 to Sept 2013. Packages depending on it ought to have changed to 'igraph' long ago

GRRGI the request of the maintainer	2013-09-24
EquiNorm the maintainer was unable to update it for 'lme4' >= 1.0	2013-09-23
RMETAR basic C error stopping installation on OS X was not corrected within 6 weeks	2013-09-20
Read.isi the maintainer address bounces	2013-09-13
TCC	2013-09-13
mfr : it was never updated from 'igraph0' to 'igraph' despite several reminders	2013-09-07
igraph0 This was a transitional package from Mar 2012 to Sept 2013. Packages depending on it ought to have changed to 'igraph' long ago	2013-09-05
laser	2013-09-04
trio the request of the maintainer	2013-08-31
driftsel	2013-08-28
opencpu.demo the request of the maintainer	2013-08-24
spGoogle policy violation (leaving browser copies running and in an unusable state)	2013-08-18
TextRegression the maintainer was unable to update it for changes in packages it depends on	2013-08-13
oposSOM This package is now available from Bioconductor 3.0 and later, only	2013-08-13
xpose4classic	2013-08-13
xpose4data	2013-08-13
xpose4generic	2013-08-13
xpose4specific	2013-08-13
geoPlot the maintainer failed to fix its frequent failures	2013-08-12
lcmr the request of the maintainer	2013-08-10
ttrTests the maintainer address bounces	2013-08-08
ExomeCNV use of non-portable x11() etc in examples	2013-07-26
HumMeth27QCReport excessive dependencies including large data packages	2013-07-26
afmtools use of non-portable x11() etc in examples	2013-07-26
bsml Fortran array bound errors were not corrected despite several reminders	2013-07-26
bwsurvival use of non-portable x11() etc in examples	2013-07-26
polyphemus use of non-portable x11() etc in examples and other issues	2013-07-26
sabreR Fortran array bound errors were not corrected despite several reminders	2013-07-26
melody its dependency 'caroline' was	2013-07-16
profanal	2013-07-12

Downloads

6.4M

Total downloads

+20.8%

vs prior period

Notable

Major version jumps

ds 1.0→2.0 stargazer 3.0.1→4.0 frontier 0.997-14→1.0-2 gtools 2.7.1→3.0.0 TEQR 1.0-0→2.0-0 Delaporte 0.1-2→1.0-0 gamlr 0.1→1.0 hht 1.0.0→2.0.0 rms 3.6-3→4.0-0 R.matlab 1.7.0→2.0.1 kza 2.03→3.0.0 WriteXLS 2.3.1→3.0.0 gains 0.1-0→1.0-0 RGCCA 1.0→2.0 SparseM 0.99→1.02 npmv 1.0→2.0 CDM 1.5-12→2.01-11 fcros 0.9→1.0 BCEA 1.3-0→2.0 epr 1.0→2.0

First-time CRAN authors

Margaret Wu Dirk Berkvens Johannes Charlier Pierre Dorny Siavash Jalal Mortaza Jamshidian Camden Jansen Bruno Levecke Sophie Roelandt Suzanne Smit Paul Torgerson Reid F. Thompson Xiyue Liao ×4 Mary C. Meyer Dan Burgess Florian Oswald Sean Carmody Krzysztof Ciomek Annabel Davies Orestis Efthimiou