rvHPDT
Calling Haplotype-Based and Variant-Based Pedigree Disequilibrium Test for Rare Variants in Pedigrees
Description
To detecting rare variants for binary traits using general pedigrees, the pedigree disequilibrium tests are proposed by collapsing rare haplotypes/variants with/without weights. To run the test, MERLIN is needed in Linux for haplotyping.
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262
Last 30 days
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640
Last 90 days
2.5K
Last year
Trend: +55% (30d vs prior 30d)
0
Last 30 days
23
Last 90 days
98
Last year
Trend: -100% (30d vs prior 30d)
6
Last 7 days
10
Last 30 days
3
All-time
autoCRAN-only: this name is served only by autoCRAN, so the count is exact.
CRAN Check Status
Show all 13 flavors
| Flavor | Status |
|---|---|
| r-devel-linux-x86_64-debian-clang | NOTE |
| r-devel-linux-x86_64-debian-gcc | NOTE |
| r-devel-linux-x86_64-fedora-clang | OK |
| r-devel-linux-x86_64-fedora-gcc | OK |
| r-devel-windows-x86_64 | OK |
| r-oldrel-macos-arm64 | OK |
| r-oldrel-macos-x86_64 | OK |
| r-oldrel-windows-x86_64 | OK |
| r-patched-linux-x86_64 | OK |
| r-release-linux-x86_64 | OK |
| r-release-macos-arm64 | OK |
| r-release-macos-x86_64 | OK |
| r-release-windows-x86_64 | OK |
Check details (2 non-OK)
CRAN incoming feasibility
Maintainer: ‘Wei Guo <wei.guo3@nih.gov>’
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Authors@R: person(given = "Wei",
family = "Guo",
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email = "wei.guo3@nih.gov")
as necessary.
CRAN incoming feasibility
Maintainer: ‘Wei Guo <wei.guo3@nih.gov>’
No Authors@R field in DESCRIPTION.
Please add one, modifying
Authors@R: person(given = "Wei",
family = "Guo",
role = c("aut", "cre"),
email = "wei.guo3@nih.gov")
as necessary.
Check History
NOTE 12 OK · 2 NOTE · 0 WARNING · 0 ERROR · 0 FAILURE Mar 10, 2026
CRAN incoming feasibility
Maintainer: ‘Wei Guo <wei.guo3@nih.gov>’
No Authors@R field in DESCRIPTION.
Please add one, modifying
Authors@R: person(given = "Wei",
family = "Guo",
role = c("aut", "cre"),
email = "wei.guo3@nih.gov")
as necessary.
CRAN incoming feasibility
Maintainer: ‘Wei Guo <wei.guo3@nih.gov>’
No Authors@R field in DESCRIPTION.
Please add one, modifying
Authors@R: person(given = "Wei",
family = "Guo",
role = c("aut", "cre"),
email = "wei.guo3@nih.gov")
as necessary.
Code
Structure
Lines of code
1,189
Files
19
Compiled share
0%
Has compiled src
No
Language breakdown
API
Exported functions
12
Internal functions
0
Recent export changes
Testing & CI
Has tests
No
Test-to-code ratio
0.00
testthat edition
–
CI present
No
CI type
[]
PR gated
No
Docs
Return-value doc rate
41.7%
\dontrun example ratio
0%
Roxygen coverage
100%
Has pkgdown
No
NEWS present
No
Health & Security signals
Informational signals; not verdicts.
on.exit coverage
–
Unsafe pattern score
2
Dep constraint coverage
0%
Secret pattern count
0
Bundled 3rd-party code
2 items
Portability & License
Min R version
2.15.0
System requirements
–
C++ standard
–
License
GPL (>= 2)
License flags
SPDX valid, OSI approved
History
Versions
4
First release
2013-07-05
Latest release
2022-05-12
Avg cadence
252 days
Cold removal rate
–
Dep drift
4
LOC over versions
Per-file churn detail lives in the source pipeline: https://github.com/r-observatory/cran-code-metrics.