Q4 2013 in CRAN

Part of 2013.

Final

141

New packages

776

Updated

Archived

Downloads

New packages (60+)

RobPer Robust Periodogram and Periodicity Detection Methods	2013-10-01
INLABMA Bayesian Model Averaging with INLA	2013-10-03
crqa Unidimensional and Multidimensional Methods for Recurrence Quantification Analysis	2013-10-03
primerTree Visually Assessing the Specificity and Informativeness of Primer Pairs	2013-10-04
servr A Simple HTTP Server to Serve Static Files or Dynamic Documents	2013-10-05
ttScreening Genome-Wide DNA Methylation Sites Screening by Use of Training and Testing Samples	2013-10-05
RcppZiggurat 'Rcpp' Integration of Different "Ziggurat" Normal RNG Implementations	2013-10-06
polyclip Polygon Clipping	2013-10-06
BGPhazard Markov Beta and Gamma Processes for Modeling Hazard Rates	2013-10-08
mizer Dynamic Multi-Species Size Spectrum Modelling	2013-10-08
mvMORPH Multivariate Comparative Tools for Fitting Evolutionary Models to Morphometric Data	2013-10-08
laGP Local Approximate Gaussian Process Regression	2013-10-09
midasr Mixed Data Sampling Regression	2013-10-10
OptHedging Estimation of value and hedging strategy of call and put options	2013-10-11
mvSLOUCH Multivariate Stochastic Linear Ornstein-Uhlenbeck Models for Phylogenetic Comparative Hypotheses	2013-10-11
CINID Curculionidae INstar IDentification	2013-10-12
cpa Confirmatory Path Analysis Through 'd-sep' Tests	2013-10-12
symbolicDA Analysis of Symbolic Data	2013-10-12
shinyRGL Shiny Wrappers for RGL	2013-10-13
BGLR Bayesian Generalized Linear Regression	2013-10-13
Correlplot A Collection of Functions for Graphing Correlation Matrices	2013-10-13
ppmlasso Point Process Models with LASSO-Type Penalties	2013-10-15
ICEbox Individual Conditional Expectation Plot Toolbox	2013-10-18
locits Test of Stationarity and Localized Autocovariance	2013-10-18
comclim Community Climate Statistics	2013-10-19
gWidgets2 Rewrite of gWidgets API for Simplified GUI Construction	2013-10-19
NSM3 Functions and Datasets to Accompany Hollander, Wolfe, and Chicken - Nonparametric Statistical Methods, Third Edition	2013-10-20
XML2R Easier XML Data Collection	2013-10-20
demoKde Kernel Density Estimation for Demonstration Purposes	2013-10-20
InterVA4 Replicate and Analyse 'InterVA4'	2013-10-21
lomb Lomb-Scargle Periodogram	2013-10-21
ACTCD Asymptotic Classification Theory for Cognitive Diagnosis	2013-10-22
HDtweedie The Lasso for Tweedie's Compound Poisson Model Using an IRLS-BMD Algorithm	2013-10-22
MicroDatosEs Utilities for Official Spanish Microdata	2013-10-22
crch Censored Regression with Conditional Heteroscedasticity	2013-10-22
directPA Direction Analysis for Pathways and Kinases	2013-10-22
scholar Analyse Citation Data from Google Scholar	2013-10-22
npsp Nonparametric Spatial Statistics	2013-10-23
PoweR Computation of Power and Level Tables for Hypothesis Tests	2013-10-24
lm.br Linear Model with Breakpoint	2013-10-24
DCL Claims Reserving under the Double Chain Ladder Model	2013-10-25
StratSel Strategic Selection Estimator	2013-10-26
bcpa Behavioral Change Point Analysis of Animal Movement	2013-10-26
hsphase Phasing, Pedigree Reconstruction, Sire Imputation and Recombination Events Identification of Half-sib Families Using SNP Data	2013-10-26
hypervolume High Dimensional Geometry, Set Operations, Projection, and Inference Using Kernel Density Estimation, Support Vector Machines, and Convex Hulls	2013-10-26
cluster.datasets Cluster Analysis Data Sets	2013-10-29
gWidgets2tcltk Toolkit Implementation of gWidgets2 for tcltk	2013-10-29
smam Statistical Modeling of Animal Movements	2013-10-29
survsim Simulation of Simple and Complex Survival Data	2013-10-29
EnvStats Package for Environmental Statistics, Including US EPA Guidance	2013-10-30
mbbefd Maxwell Boltzmann Bose Einstein Fermi Dirac Distribution and Destruction Rate Modelling	2013-10-30
ClustVarLV Clustering of Variables Around Latent Variables	2013-10-31
aprof Amdahl's Profiler, Directed Optimization Made Easy	2013-10-31
RockFab Rock Fabric and Strain Analysis Tools	2013-11-02
krm Kernel Based Regression Models	2013-11-03
dynBiplotGUI Full Interactive GUI for Dynamic Biplot in R	2013-11-04
ABCoptim Implementation of Artificial Bee Colony (ABC) Optimization	2013-11-05
diffIRT Diffusion IRT Models for Response and Response Time Data	2013-11-05
eggCounts Hierarchical Modelling of Faecal Egg Counts	2013-11-05
shinyAce Ace Editor Bindings for Shiny	2013-11-05

Archived / removed

Why

6 maintainer address <yokkuns@tkul.jp> bounced
4 : no response nor update was received after a request to clean up WARNINGs
3 maintainer address <kby@bios.unc.edu> bounced
3 reason not recorded
3 the request of the maintainer
2 maintainer address <edgar.santos@etecsa.cu> bounced
2 maintainer address <rod.ball@scionresearch.com> bounced
2 maintainer address <yxiao@gsu.edu> bounced

RiDMC the request of the maintainer, who did not have time to update it for the then current lua 5.2	2013-12-30
QLSpline requested by the maintainer <lundsp@gmail.com>	2013-12-25
Peak2Trough depends on 'sspir' and no response from maintainer	2013-12-22
BINCO maintainer address <shuangli@fhcrc.org> bounced	2013-12-21
CAscaling maintainer address <j.h.straat@uvt.nl> bounced	2013-12-21
CalciOMatic maintainer address <sebastien.joucla@parisdescartes.fr> bounced	2013-12-21
ChangeAnomalyDetection maintainer address <yokkuns@tkul.jp> bounced	2013-12-21
CvM2SL1Test maintainer address <yxiao@gsu.edu> bounced	2013-12-21
CvM2SL2Test maintainer address <yxiao@gsu.edu> bounced	2013-12-21
DesignPatterns maintainer address <j.zhang@dkfz.de> bounced	2013-12-21
EasyUpliftTree maintainer address <yokkuns@tkul.jp> bounced	2013-12-21
HGLMMM maintainer address <m.molas@erasmusmc.nl> bounced	2013-12-21
MCUSUM maintainer address <edgar.santos@etecsa.cu> bounced	2013-12-21
MEWMA maintainer address <edgar.santos@etecsa.cu> bounced	2013-12-21
MLDA maintainer address <w.dai@imperial.ac.uk> bounced	2013-12-21
MTSKNN maintainer address <wei.dou@yale.edu> bounced	2013-12-21
NMRS maintainer address <izquierdo@ieb.ucm.es> bounced	2013-12-21
RSearchYJ maintainer address <yokkuns@tkul.jp> bounced	2013-12-21
RWebMA maintainer address <yokkuns@tkul.jp> bounced	2013-12-21
Rvelslant maintainer address <eric.thompson@tufts.edu> bounced	2013-12-21
SRMA maintainer address <wenyiw@mdanderson.org> bounced	2013-12-21
SlimPLS maintainer address <oferlav1@post.tau.ac.il> bounced	2013-12-21
StructR maintainer address <jrwebber@uvm.edu> bounced	2013-12-21
VizCompX maintainer address <neil.diamond@buseco.monash.edu.au> bounced	2013-12-21
YjdnJlp maintainer address <yokkuns@tkul.jp> bounced	2013-12-21
aggrisk maintainer address <m.stanton@lancaster.ac.uk> bounced	2013-12-21
binarySimCLF maintainer address <kby@bios.unc.edu> bounced	2013-12-21
corrperm maintainer address <dmp71@pitt.edu> bounced	2013-12-21
el.convex maintainer address <danyang@wharton.upenn.edu> bounced	2013-12-21
iWebPlots maintainer address <e.chatzimichali@cranfield.ac.uk> bounced	2013-12-21
jmec maintainer address <w.m.vd.wal@umcutrecht.nl> bounced	2013-12-21
knorm maintainer address <slteng@stat.berkeley.edu> bounced	2013-12-21
magnets maintainer address <haiqian@ee.ucla.edu> bounced	2013-12-21
mvtBinaryEP maintainer address <kby@bios.unc.edu> bounced	2013-12-21
nga maintainer address <james.kaklamanos@tufts.edu> bounced	2013-12-21
orth maintainer address <kby@bios.unc.edu> bounced	2013-12-21
rHadoopClient maintainer address <yokkuns@tkul.jp> bounced	2013-12-21
sessionTools maintainer address <matt.furia@sagebase.org> bounced	2013-12-21
stratasphere maintainer address <dperciva@andrew.cmu.edu> bounced	2013-12-21
ttime maintainer address <rnagarajan@uams.edu> bounced	2013-12-21
gppois requested by the maintainer <charles.r.hogg@gmail.com>	2013-12-20
sspir : the maintainer address bounces and mail to other known addresses elicited no response. Then archived on 2013-12-23	2013-12-20
BayesQTLBIC maintainer address <rod.ball@scionresearch.com> bounced	2013-12-18
GridR maintainer address <dennis.wegener@iais.fraunhofer.de> bounced	2013-12-18
gamesNws requested by the maintainer <MSchmidberger@freenet.de>	2013-12-18
ldDesign maintainer address <rod.ball@scionresearch.com> bounced	2013-12-18
gmvalid : no response nor update was received after a request to clean up WARNINGs	2013-12-16
postgwas : no response nor update was received after a request to clean up WARNINGs	2013-12-16
rlandscape : no response nor update was received after a request to clean up WARNINGs	2013-12-16
spclust : no response nor update was received after a request to clean up WARNINGs	2013-12-16
VA	2013-12-13
stochmod the request of the maintainer	2013-12-12
DataFrameConstr the request of the maintainer	2013-12-11
gearman failure to compile cross-platform	2013-12-04
RadialPlotter	2013-11-27
trex the request of the maintainer	2013-11-19
ExactNumCI repeated notifications of C++ errors elicited no response	2013-11-08
multmod the request of the maintainer. He wrote: 'All functionality of this package is now present in the package multcomp'	2013-10-31
uskew	2013-10-15
rriskBayes no response to repeated requests to use cross-platform dependencies	2013-10-04

Downloads

Total downloads

+25%

vs prior period

Notable

Major version jumps

isdals 1.0-6→2.0-1 excursions 0.0-20130917→1.0-20131003 teigen 1.0→2.0.1 kitagawa 1.1-1→2.1-0 fdrci 1.0→2.0 orsk 0.1-6→1.0-0 VIM 3.0.3.1→4.0.0 disclapmix 0.3→1.0 mixtools 0.4.6→1.0.0 FITSio 1.2-0→2.0-0 betategarch 2.0→3.0 NPCirc 1.0.0→2.0.0 polyclip 0.0-1→1.0-0 biomod2 2.1.15→3.1-18 clustvarsel 1.3→2.0 evmix 1.0→2.0 mirt 0.9.0→1.0 BayesCR 0.0→1.0 lifecontingencies 0.9.8.6→1.0 RAppArmor 0.8.3→1.0.0

First-time CRAN authors

Brenton R. Clarke Jonathan Rathjens ×2 Anita M. Thieler Polyphony Bruna Moreno I. Coco Rick Dale James D. Dixon Giuseppe Leonardi Dan Mønster John C. Nash Alexandra Paxton Sebastian Wallot ×2 Matt Cannon Mohammad Nahian Ferdous Abrar Jesse Anderson Yu Jiang ×4 Romain Lesur ×4 Meredith Ray ×2 Xin Tong ×4 Hongmei Zhang