R Observatory: Metrics for HumMeth27QCReport version 1.2.14

Balamuta, James Joseph

doi:10.5281/zenodo.21843040

This package was removed from CRAN on 2013-07-26. Its history is shown below.

Reason: excessive dependencies including large data packages

Details below reflect version 1.2.14, its last release before removal.

HumMeth27QCReport

1.2.14

HumMeth27QCReport: quality control and preprocessing of Illumina's Infinium methylation assays.

0packages depend

–downloads / year

–test coverage

–checks pass

Overview

About

Maintained by F.M. Mancuso10 releasesCRAN page ↗

HumMeth27QCReport is a tool for quality control and preprocessing of Illumina's Infinium BeadChip methylation assays. The automated analysis pipeline comprises data import, normalization, quality diagnostics and data export.

Install

R (source archive)

url <- "https://cran.r-project.org/src/contrib/Archive/HumMeth27QCReport/HumMeth27QCReport_1.2.14.tar.gz"
pkgFile <- "HumMeth27QCReport_1.2.14.tar.gz"
download.file(url, pkgFile)
install.packages(pkgFile, type = "source", repos = NULL)

This package is no longer on CRAN, so install.packages() cannot fetch it by name. This downloads the last archived source (1.2.14) and builds it locally. Install its dependencies first, and note that building from source needs the usual compiler toolchain.

Health

CRAN checks

CRAN check results are not tracked yet.

Code health

None

Tests · ratio 0.00

not tracked

Coverage

100%

Documentation · exports

12

Dependencies · direct

Documentation

READMENoVignettesNopkgdown siteNoNEWSNoCode of conductNoContributing guideNo

Examples that run: 0%
Documented parameters: 100%
Return-value docs: 100%
References docs: 0%

Downloads

HumMeth27QCReport Releases R versions

Daily download trend is not available in this view yet.

Compare downloads with other packages →

Dependencies

Declared dependencies

12 external dependencies (excludes base and recommended)

Depends (11)

R >= 2.13.0methylumi lumi IlluminaHumanMethylation27k.db IlluminaHumanMethylation450k.db amap Hmisc gplots plotrix WriteXLS tcltk2

Imports (2)

AnnotationDbi Biobase

LinkingTo (0)

none

Suggests (0)

none

Enhances (0)

none

Dependency license breakdown →

Reverse dependencies

0direct

–indirect (not tracked)

Nothing depends on this yet.

Code & Tests

People & History

People (2)

Other (2)

F.M. Mancuso

Contributor

G. Roma

Contributor · added in 1.2.8

Package Timeline

10 releases. Pick two to compare their code metrics. R releases are shown for context.

R
R 3.1.0 released · 2014-04-10
archivedRemoved from CRAN
2013-07-26
excessive dependencies including large data packages
R
R 3.0.0 released · 2013-04-03
1.2.14
2012-06-20 · diff ↗
R
R 2.15.0 released · 2012-03-30
R
R 2.14.0 released · 2011-10-31
R
R 2.13.0 released · 2011-04-13
1.2.9
2011-02-28 · diff ↗
1.2.8
2011-02-28 · diff ↗
1.2.13
2011-02-28 · diff ↗
1.2.12
2011-02-28 · diff ↗
1.2.11
2011-02-28 · diff ↗
1.2.10
2011-02-28 · diff ↗
R
R 2.12.0 released · 2010-10-15
1.1.1
2010-10-05 · diff ↗
1.1
2010-10-05 · diff ↗

Show 2 earlier events

1.0
2010-10-05
R
R 2.11.0 released · 2010-04-22

Package metadata

Total releases: 10
License: GPL-2 OSI
Minimum R: ≥ 2.13.0
Download size: not tracked yet
Installed size: not tracked yet
With dependencies: not tracked yet

Cite

Cite this package

Run in R for the authors' preferred citation:

citation("HumMeth27QCReport")

Format

Mancuso, F. M., & Roma, G. (n.d.). HumMeth27QCReport: HumMeth27QCReport: quality control and preprocessing of Illumina's Infinium methylation assays. (Version 1.2.14) [Computer software]. Retrieved August 13, 2026, from https://CRAN.R-project.org/package=HumMeth27QCReport

This is what citation() produces when a package has no citation file of its own. If it prints something else, use that.

Cite the R Observatory

For a number measured here: a download total, a coverage figure, an archival date.

Format

APA

Balamuta, J. J. (2026). R Observatory: Metrics for HumMeth27QCReport version 1.2.14 [Data set]. HJJB, LLC. Data release v2026-08-11. https://doi.org/10.5281/zenodo.21843040

From data release v2026-08-11, which the citation names so these numbers can be found later. More on citing and the projects behind them.

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