R Observatory: Metrics for ExomeCNV version 1.4

Balamuta, James Joseph

doi:10.5281/zenodo.21843040

This package was removed from CRAN on 2013-07-26. Its history is shown below.

Reason: use of non-portable x11() etc in examples

Details below reflect version 1.4, its last release before removal.

ExomeCNV

1.4

Detect CNV and LOH from Exome Sequencing Data

0packages depend

–downloads / year

–test coverage

–checks pass

Overview

About

Maintained by J. Fah Sathirapongsasuti5 releasesCRAN page ↗

ExomeCNV is a statistical method to detect CNV and LOH using depth-of-coverage and B-allele frequencies from mapped short sequence reads in exome sequencing data.

Install

R (source archive)

url <- "https://cran.r-project.org/src/contrib/Archive/ExomeCNV/ExomeCNV_1.4.tar.gz"
pkgFile <- "ExomeCNV_1.4.tar.gz"
download.file(url, pkgFile)
install.packages(pkgFile, type = "source", repos = NULL)

This package is no longer on CRAN, so install.packages() cannot fetch it by name. This downloads the last archived source (1.4) and builds it locally. Install its dependencies first, and note that building from source needs the usual compiler toolchain.

Health

CRAN checks

CRAN check results are not tracked yet.

Code health

None

Tests · ratio 0.00

not tracked

Coverage

1

Dependencies · direct

Documentation

READMEYes · 5 wordsVignettesNopkgdown siteNoNEWSNoCode of conductNoContributing guideNo

Examples that run: 100%
Documented parameters: not tracked
Return-value docs: not tracked
References docs: 100%

Downloads

ExomeCNV Releases R versions

Daily download trend is not available in this view yet.

Compare downloads with other packages →

Dependencies

Declared dependencies

1 external dependency (excludes base and recommended)

Depends (1)

DNAcopy

Imports (0)

none

LinkingTo (0)

none

Suggests (0)

none

Enhances (0)

none

Dependency license breakdown →

Reverse dependencies

0direct

–indirect (not tracked)

Nothing depends on this yet.

Code & Tests

Datasets

People & History

People (3)

Other (3)

J. Fah Sathirapongsasuti

Contributor

Hane Lee

Contributor

and Stanley F. Nelson

Contributor

Package Timeline

5 releases. Pick two to compare their code metrics. R releases are shown for context.

R
R 3.1.0 released · 2014-04-10
archivedRemoved from CRAN
2013-07-26
use of non-portable x11() etc in examples
R
R 3.0.0 released · 2013-04-03
1.4
2012-08-24 · diff ↗
1.3
2012-05-30 · diff ↗
R
R 2.15.0 released · 2012-03-30
R
R 2.14.0 released · 2011-10-31
1.2
2011-09-09 · diff ↗
1.1
2011-09-09 · diff ↗
R
R 2.13.0 released · 2011-04-13
1.0
2011-01-27
R
R 2.12.0 released · 2010-10-15

Package metadata

Total releases: 5
License: LGPL-2.1 OSI
Bundled data: 4.3 KB / 11 files
Download size: not tracked yet
Installed size: not tracked yet
With dependencies: not tracked yet

Cite

Cite this package

Run in R for the authors' preferred citation:

citation("ExomeCNV")

Format

Sathirapongsasuti, J. F., Lee, H., & Nelson, a. S. F. (n.d.). ExomeCNV: Detect CNV and LOH from Exome Sequencing Data (Version 1.4) [Computer software]. Retrieved August 13, 2026, from https://CRAN.R-project.org/package=ExomeCNV

This is what citation() produces when a package has no citation file of its own. If it prints something else, use that.

Cite the R Observatory

For a number measured here: a download total, a coverage figure, an archival date.

Format

APA

Balamuta, J. J. (2026). R Observatory: Metrics for ExomeCNV version 1.4 [Data set]. HJJB, LLC. Data release v2026-08-11. https://doi.org/10.5281/zenodo.21843040

From data release v2026-08-11, which the citation names so these numbers can be found later. More on citing and the projects behind them.

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