R Observatory: Metrics for DESeq version 1.42.0

Balamuta, James Joseph

doi:10.5281/zenodo.21843040

DESeq

Bioc removed

Differential gene expression analysis based on the negative binomial distribution

v1.42.0 · GPL (>= 3)

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Release Lineage

Entered 2.6 · Apr 23, 2010

Removed after 3.12 · Oct 28, 2020

1.0 In 22 of 49 releases 3.23

Description

Estimate variance-mean dependence in count data from high-throughput sequencing assays and test for differential expression based on a model using the negative binomial distribution

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Topics

Software › ResearchField › ImmunoOncology

Software › Technology › Sequencing

Software › Technology › Sequencing › ChIPSeq

Software › Technology › Sequencing › RNASeq

Software › Technology › SAGE

Software › BiologicalQuestion › DifferentialExpression

Depended on by (12)

Bioconductor (12)

ampliQueso DBChIP dexus EDDA ELBOW gCMAP metaseqR Polyfit rnaSeqMap SSPA ToPASeq XBSeq

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At a glance

Version: 1.42.0
License: GPL (>= 3)
Requires R: ≥ 4.0
Entered: 2.6 · Apr 23, 2010
Last seen: 3.12 · Oct 28, 2020

Available on

CRAN r2u Bioconductor autoCRAN COPR

Dependencies

Depends

BiocGenerics (>= 0.7.5)BiocBiobase (>= 2.21.7)Bioclocfit lattice

Imports

genefilterBiocgeneplotterBiocmethodsMASSRColorBrewer

Suggests

pasilla (>= 0.2.10)BiocvsnBiocgplots

Source & history

Cite

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citation("DESeq")

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Format

APA

Balamuta, J. J. (2026). R Observatory: Metrics for DESeq version 1.42.0 [Data set]. HJJB, LLC. Data release v2026-08-22. https://doi.org/10.5281/zenodo.21843040

From data release v2026-08-22, which the citation names so these numbers can be found later. More on citing and the projects behind them.

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