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RNAinteract

Bioc removed

Estimate Pairwise Interactions from multidimensional features

v1.54.0 · Artistic-2.0
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Release Lineage

Entered 2.8 · Apr 14, 2011

Removed after 3.20 · Oct 30, 2024

1.0 In 28 of 49 releases 3.23

Description

RNAinteract estimates genetic interactions from multi-dimensional read-outs like features extracted from images. The screen is assumed to be performed in multi-well plates or similar designs. Starting from a list of features (e.g. cell number, area, fluorescence intensity) per well, genetic interactions are estimated. The packages provides functions for reporting interacting gene pairs, plotting heatmaps and double RNAi plots. An HTML report can be written for quality control and analysis.

Code

Code metrics have not been computed for this package yet.

Topics

Software › ResearchField › ImmunoOncology
Software › AssayDomain › CellBasedAssays
Software › WorkflowStep › QualityControl
Software › WorkflowStep › Preprocessing
Software › WorkflowStep › Visualization

Depended on by (1)

Bioconductor (1)

RNAinteractMAPK

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