AgiMicroRna
Bioc currentProcessing and Differential Expression Analysis of Agilent microRNA chips
Release Lineage
Entered 2.5 · Oct 28, 2009
Current · Requires R 4.6
Description
Processing and Analysis of Agilent microRNA data
None published for Bioconductor
Test coverage
Line coverage
–
Expression
–
Tests / Examples
–
Functions
43 22 exported
Complexity
6.8 avg / 20 max
Call network
43 nodes / 36 edges
Test coverage is not measured for Bioconductor packages; nodes fall back to a neutral fill.
Call graph
Open call graph →Lowest coverage
Per-function coverage is not measured for this package yet.
Code
Structure
Lines of code
4,587
Files
75
Compiled share
0%
Has compiled src
No
Language breakdown
API
Exported functions
22
Internal functions
6
Testing
Has tests
No
Test-to-code ratio
0.00
testthat edition
–
Docs
Roxygen coverage
100%
Health & Security signals
Informational signals; not verdicts.
on.exit coverage
33.3%
Unsafe pattern score
0
Dep constraint coverage
14.3%
Secret pattern count
0
Bundled 3rd-party code
2 items
Portability & License
Min R version
2.10
System requirements
–
C++ standard
–
License
GPL-3
License flags
SPDX valid, OSI approved
History
Versions
34
First release
2009-10-27
Latest release
2026-04-28
Avg cadence
182 days
Cold removal rate
–
Dep drift
2
LOC over versions
Per-file churn detail lives in the source pipeline: https://github.com/r-observatory/bioc-code-metrics.
Documentation
- Help pages
- 29
- Examples that run
- 57%12 run in a plain check · 9 never run
- Exported functions with examples
- 91%
- Documented parameters
- 100%
- Return-value docs
- 45%
- Help pages citing references
- 41%
- AgiMicroRna PDF
Repository practices
Checks read the Bioconductor git repository (git.bioconductor.org), branch RELEASE_3_23.
No development-tooling practices detected in the Bioconductor git repository.
Datasets
| Name | Class | Size | Also in |
|---|---|---|---|
| dd.micro | uRNAList | 7 elements | No other package |
| ddPROC | uRNAList | 7 elements | No other package |
| targets.micro | data.frame | 6 × 4 | No other package |
Topics
People (from the free-text Author field)
Cite
Cite this package
Run in R for the authors' preferred citation:
citation("AgiMicroRna")Cite the R Observatory
For a number measured here: a download total, a coverage figure, an archival date.
From data release v2026-10-23, which the citation names so these numbers can be found later. More on citing and the projects behind them.