HD2013SGI
Bioc currentMapping genetic interactions in human cancer cells with RNAi and multiparametric phenotyping
Release Lineage
Entry release not yet recorded. Currently in release 3.23, requires R 4.6.
Description
This package contains the experimental data and a complete executable transcript (vignette) of the analysis of the HCT116 genetic interaction matrix presented in the paper "Mapping genetic interactions in human cancer cells with RNAi and multiparametric phenotyping" by C. Laufer, B. Fischer, M. Billmann, W. Huber, M. Boutros; Nature Methods (2013) 10:427-31. doi: 10.1038/nmeth.2436.
None published for Bioconductor
Test coverage
Line coverage
–
Expression
–
Tests / Examples
–
Functions
10 4 exported
Complexity
4 avg / 15 max
Call network
10 nodes / 3 edges
Test coverage is not measured for Bioconductor packages; nodes fall back to a neutral fill.
Call graph
Open call graph →Lowest coverage
Per-function coverage is not measured for this package yet.
Code
Structure
Lines of code
3,606
Files
44
Compiled share
0%
Has compiled src
No
Language breakdown
API
Exported functions
4
Internal functions
6
Testing
Has tests
No
Test-to-code ratio
0.00
testthat edition
–
Docs
Roxygen coverage
100%
Health & Security signals
Informational signals; not verdicts.
on.exit coverage
0%
Unsafe pattern score
0
Dep constraint coverage
0%
Secret pattern count
0
Bundled 3rd-party code
2 items
Portability & License
Min R version
2.10.0
System requirements
1 externalGNU make
C++ standard
–
License
Artistic-2.0
License flags
SPDX valid, OSI approved
History
Versions
26
First release
2014-02-10
Latest release
2026-04-28
Avg cadence
182 days
Cold removal rate
–
Dep drift
0
LOC over versions
Per-file churn detail lives in the source pipeline: https://github.com/r-observatory/bioc-code-metrics.
Documentation
- Help pages
- 14includes a package overview page
- Examples that run
- 100%10 run in a plain check
- Exported functions with examples
- 0%
- Documented parameters
- 100%
- Return-value docs
- 100%
- Help pages citing references
- 100%
- HD2013SGI PDF
Repository practices
Checks read the Bioconductor git repository (git.bioconductor.org), branch RELEASE_3_23.
No development-tooling practices detected in the Bioconductor git repository.
Topics
Suggested by (1)
People (from the free-text Author field)
Cite
Cite this package
Run in R for the authors' entry:
citation("HD2013SGI")The package provides a citation file, so citation() returns the authors' own entry.
It points to 10.1038/nmeth.2436.
Cite the R Observatory
For a number measured here: a download total, a coverage figure, an archival date.
From data release v2026-10-26, which the citation names so these numbers can be found later. More on citing and the projects behind them.