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biocGraph

Bioc current

Graph examples and use cases in Bioinformatics

v1.74.0 · software · Artistic-2.0

Release Lineage

Entered 2.1 · Oct 8, 2007

Current · Requires R 4.6

1.0 In 38 of 49 releases 3.23

Description

This package provides examples and code that make use of the different graph related packages produced by Bioconductor.

Test coverage

Line coverage

Expression

Tests / Examples

Functions

1 0 exported

Complexity

4 avg / 4 max

Call network

1 nodes / 0 edges

Test coverage is not measured for Bioconductor packages; nodes fall back to a neutral fill.

Loading call graph…

Lowest coverage

Per-function coverage is not measured for this package yet.

Code

Structure

Lines of code

1,574

Files

7

Compiled share

0%

Has compiled src

No

Language breakdown

R 139 (8.8%)Docs 120 (7.6%)Vignettes 1,315 (83.5%)

API

Exported functions

1

Internal functions

1

Testing & CI

Has tests

No

Test-to-code ratio

0.00

testthat edition

CI present

No

CI type

[]

PR gated

No

Docs

Roxygen coverage

100%

Health & Security signals

Informational signals; not verdicts.

on.exit coverage

Unsafe pattern score

0

Dep constraint coverage

0%

Secret pattern count

0

Bundled 3rd-party code

2 items

Portability & License

Min R version

System requirements

C++ standard

License

Artistic-2.0

License flags

SPDX valid, OSI approved

History

Versions

38

First release

2007-10-06

Latest release

2026-04-28

Avg cadence

182 days

Cold removal rate

Dep drift

8

LOC over versions

v2.1: 170 LOCv2.2: 258 LOCv2.3: 258 LOCv2.4: 258 LOCv2.5: 259 LOCv2.6: 259 LOCv2.7: 259 LOCv2.8: 259 LOCv2.9: 259 LOCv2.10: 259 LOCv2.11: 259 LOCv2.12: 259 LOCv2.13: 259 LOCv2.14: 1,574 LOCv3.0: 1,574 LOCv3.1: 1,574 LOCv3.2: 1,574 LOCv3.3: 1,574 LOCv3.4: 1,574 LOCv3.5: 1,574 LOCv3.6: 1,574 LOCv3.7: 1,574 LOCv3.8: 1,574 LOCv3.9: 1,574 LOCv3.10: 1,574 LOCv3.11: 1,574 LOCv3.12: 1,574 LOCv3.13: 1,574 LOCv3.14: 1,574 LOCv3.15: 1,574 LOCv3.16: 1,574 LOCv3.17: 1,574 LOCv3.18: 1,574 LOCv3.19: 1,574 LOCv3.20: 1,574 LOCv3.21: 1,574 LOCv3.22: 1,574 LOCv3.23: 1,574 LOC

Per-file churn detail lives in the source pipeline: https://github.com/r-observatory/bioc-code-metrics.

Documentation

Documentation
READMENoVignettesYes · dynamicpkgdown siteNoNEWSNoCode of conductNoContributing guideNo
Examples that run
100%
Documented parameters
not tracked
Return-value docs
100%
References docs
0%

Topics

Depended on by (2)

People

Florian Hahne

Cite

Cite this package

Run in R for the authors' preferred citation:

citation("biocGraph")

Cite the R Observatory

For a number measured here: a download total, a coverage figure, an archival date.

APA

Balamuta, J. J. (2026). R Observatory: Metrics for biocGraph version 1.74.0 [Data set]. HJJB, LLC. Data release v2026-08-23. https://doi.org/10.5281/zenodo.21843040

From data release v2026-08-23, which the citation names so these numbers can be found later. More on citing and the projects behind them.

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