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SeqArray

Bioc current

Data management of large-scale whole-genome sequence variant calls using GDS files

v1.52.1 · software · GPL-3
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Release Lineage

Entered 2.12 · Apr 4, 2013

Current · Requires R 4.6

1.0 In 27 of 49 releases 3.23

Description

Data management of large-scale whole-genome sequencing variant calls with thousands of individuals: genotypic data (e.g., SNVs, indels and structural variation calls) and annotations in SeqArray GDS files are stored in an array-oriented and compressed manner, with efficient data access using the R programming language.

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Topics

Software › Infrastructure
Software › Infrastructure › DataRepresentation
Software › Technology › Sequencing
Software › ResearchField › Genetics

Depended on by (13)

Bioconductor (11)

DelayedDataFrame GBScleanR GDSArray GENESIS ggmanh HIBAG SAIGEgds SeqVarTools VariantExperiment VCFArray pgen2gds

CRAN (2)

GMMAT MAGEE

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