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VCFArray

Bioc current

Representing on-disk / remote VCF files as array-like objects

v1.28.0 · software · GPL-3
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Release Lineage

Entered 3.9 · May 3, 2019

Current · Requires R 4.6

1.0 In 15 of 49 releases 3.23

Description

VCFArray extends the DelayedArray to represent VCF data entries as array-like objects with on-disk / remote VCF file as backend. Data entries from VCF files, including info fields, FORMAT fields, and the fixed columns (REF, ALT, QUAL, FILTER) could be converted into VCFArray instances with different dimensions.

Code

Code metrics have not been computed for this package yet.

Topics

Software › Infrastructure
Software › Infrastructure › DataRepresentation
Software › Technology › Sequencing
Software › BiologicalQuestion › VariantAnnotation

Depended on by (1)

Bioconductor (1)

S4Cartographer

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