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Removed from CRAN

This package is no longer available on CRAN, archived Dec 19, 2013 (Archived on 2014-05-31 as it depends on 'gdsfmt'.). The details below reflect its last known state.

SNPRelate

v0.9.19 · ·

Downloads

These figures are historical. This package is no longer on CRAN, so rolling download windows have been decaying since removal. The 30-day and 90-day totals may be zero or close to zero for packages removed long ago; the 1-year total is the most meaningful figure for recently removed packages.

r2u Bioc

49

Last 30 days

242

Last 90 days

736

Last year

Trend: -43% (30d vs prior 30d)

bioconda Bioc

826

Last 30 days

2.5K

Last 90 days

5.7K

Last year

Trend: -11.1% (30d vs prior 30d)

Code intelligence has not been computed for this package yet.

Code

Structure

Lines of code

18,478

Files

91

Compiled share

55.1%

Has compiled src

Yes

Language breakdown

R 4,832 (26.2%)C/C++/src 10,190 (55.1%)Tests 31 (0.2%)Docs 2,870 (15.5%)Vignettes 555 (3%)

API

Exported functions

43

Internal functions

0

Testing & CI

Has tests

Yes

Test-to-code ratio

0.01

testthat edition

CI present

No

CI type

[]

PR gated

No

Docs

Return-value doc rate

\dontrun example ratio

0%

Roxygen coverage

Has pkgdown

No

NEWS present

Yes

Health & Security signals

Informational signals; not verdicts.

on.exit coverage

Unsafe pattern score

0

Dep constraint coverage

100%

Secret pattern count

0

Bundled 3rd-party code

2 items

Portability & License

Min R version

2.10

System requirements

C++ standard

License

GPL-3

License flags

SPDX valid, OSI approved

History

Versions

20

First release

2011-08-02

Latest release

2013-12-19

Avg cadence

25 days

Cold removal rate

Dep drift

0

LOC over versions

v0.9.0: 12,712 LOCv0.9.1: 12,770 LOCv0.9.2: 13,341 LOCv0.9.3: 13,510 LOCv0.9.4: 13,589 LOCv0.9.5: 14,363 LOCv0.9.6: 14,555 LOCv0.9.7: 15,030 LOCv0.9.8: 15,965 LOCv0.9.10: 16,462 LOCv0.9.9: 16,316 LOCv0.9.11: 16,790 LOCv0.9.13: 17,079 LOCv0.9.12: 17,069 LOCv0.9.14: 17,806 LOCv0.9.15: 17,961 LOCv0.9.16: 18,334 LOCv0.9.17: 18,393 LOCv0.9.18: 18,395 LOCv0.9.19: 18,478 LOC

Per-file churn detail lives in the source pipeline: https://github.com/r-observatory/cran-code-metrics.

Reverse Dependencies (6)

Dependency Network

Dependencies Reverse dependencies EthSEQ dartR dartR.base gwid simplePHENOTYPES snplinkage SNPRelate