ggmanh
Bioc currentVisualization Tool for GWAS Result
Release Lineage
Entered 3.15 · Apr 27, 2022
Current · Requires R 4.6
Description
Manhattan plot and QQ Plot are commonly used to visualize the end result of Genome Wide Association Study. The "ggmanh" package aims to keep the generation of these plots simple while maintaining customizability. Main functions include manhattan_plot, qqunif, and thinPoints.
None published for Bioconductor
Test coverage
Line coverage
–
Expression
–
Tests / Examples
–
Functions
47 10 exported
Complexity
4.8 avg / 24 max
Call network
47 nodes / 48 edges
Test coverage is not measured for Bioconductor packages; nodes fall back to a neutral fill.
Call graph
Open call graph →Lowest coverage
Per-function coverage is not measured for this package yet.
Code
Structure
Lines of code
3,616
Files
33
Compiled share
0%
Has compiled src
No
Language breakdown
API
Exported functions
10
Internal functions
37
Recent export changes
Testing
Has tests
Yes
Test-to-code ratio
0.05
testthat edition
3
Docs
Roxygen coverage
100%
Health & Security signals
Informational signals; not verdicts.
on.exit coverage
0%
Unsafe pattern score
0
Dep constraint coverage
6.7%
Secret pattern count
0
Bundled 3rd-party code
2 items
Portability & License
Min R version
–
System requirements
–
C++ standard
–
License
MIT + file LICENSE
License flags
SPDX valid, OSI approved
History
Versions
9
First release
2022-04-26
Latest release
2026-04-28
Avg cadence
182 days
Cold removal rate
–
Dep drift
5
LOC over versions
Per-file churn detail lives in the source pipeline: https://github.com/r-observatory/bioc-code-metrics.
Documentation
- Help pages
- 12 (1 internal)includes a package overview page
- Examples that run
- 100%8 run in a plain check
- Exported functions with examples
- 89%
- Documented parameters
- 93%
- Return-value docs
- 89%
- Help pages citing references
- 0%
Repository practices
Checks read the Bioconductor git repository (git.bioconductor.org), branch RELEASE_3_23.
No development-tooling practices detected in the Bioconductor git repository.
Topics
Suggested by (2)
People
- John Lee author maintainer
-
John Lee
author
AbbVie
- Xiuwen Zheng contributor data contributor
Cite
Cite this package
Run in R for the authors' preferred citation:
citation("ggmanh")This package has no citation file, so citation() returns this entry built from DESCRIPTION.
Cite the R Observatory
For a number measured here: a download total, a coverage figure, an archival date.
From data release v2026-10-24, which the citation names so these numbers can be found later. More on citing and the projects behind them.