R Observatory: Metrics for MAGEE version 1.4.5

Balamuta, James Joseph

doi:10.5281/zenodo.21843040

MAGEE

1.4.5

Mixed Model Association Test for GEne-Environment Interaction

0packages depend

3.6Kdownloads / year

1.9%test coverage

13/13checks pass

Overview

About

Maintained by Han ChenFirst published 2023-04-1815 releasesCRAN page ↗

Use a 'glmmkin' class object (GMMAT package) from the null model to perform generalized linear mixed model-based single-variant and variant set main effect tests, gene-environment interaction tests, and joint tests for association, as proposed in Wang et al. (2020) DOI:10.1002/gepi.22351.

Install

R (CRAN)Ubuntu (r2u)

install.packages("MAGEE", repos = "https://cloud.r-project.org/")

Installs the current CRAN release. Prebuilt binaries on Windows and macOS.

Release

# enable cranapt (r2u) if it is not already set up, then install
grep -rqs r2u.stat.illinois.edu /etc/apt/sources.list /etc/apt/sources.list.d/ \
  || curl -fsSL https://raw.githubusercontent.com/eddelbuettel/r2u/master/inst/scripts/add_cranapt_noble.sh | sudo bash
sudo apt install -y r-cran-magee

Fast Ubuntu binaries via r2u (no compilation). The cranapt setup runs once and is skipped when it is already enabled.

bspm (used by r2u) also needs make: sudo apt install make

Health

CRAN checks

13OK

Slowest check: 7.3 min · r-oldrel-macos-x86_64

Code health

Yes

Tests · ratio 0.78

1.9%

Coverage · measured lines

100%

Documentation · exports

8

Dependencies · direct

Check history

OK2026-08-05
13 OK · 0 NOTE · 0 WARNING · 0 ERROR · 0 FAILURE
NOTE2026-08-01
12 OK · 1 NOTE · 0 WARNING · 0 ERROR · 0 FAILURE
OK2026-04-25
12 OK · 0 NOTE · 0 WARNING · 0 ERROR · 0 FAILURE
NOTE2026-04-22
11 OK · 3 NOTE · 0 WARNING · 0 ERROR · 0 FAILURE
ERROR2026-04-18
10 OK · 3 NOTE · 0 WARNING · 1 ERROR · 0 FAILURE

Show 1 earlier snapshots

NOTE2026-03-10
11 OK · 3 NOTE · 0 WARNING · 0 ERROR · 0 FAILURE

Documentation

READMENoVignettesYes · staticpkgdown siteNoNEWSNoCode of conductNoContributing guideNo

Examples that run: 25%
Documented parameters: 95%
Return-value docs: 100%
References docs: 83%

Downloads

3.6K

CRAN downloads in the past year

Rank #14,560 · ~10/day · ~297/mo

Releases R versions

Daily download trend is not available in this view yet.

17730 days

73190 days

3.6K1 year

Compare downloads with other packages →

Also on408 r2u

Dependencies

Declared dependencies

11 external dependencies (excludes base and recommended)

Depends (1)

R >= 3.2.0

Imports (8)

RcppMatrixparallelMASSforeach GMMAT CompQuadForm data.table

LinkingTo (2)

Rcpp RcppArmadillo

Suggests (4)

doMC SeqArray SeqVarTools testthat

Enhances (0)

none

Dependency license breakdown →

Reverse dependencies

0direct

0indirect

Nothing depends on this yet.

Code & Tests

Datasets

People & History

People (8)

Maintainer (1)

Han Chen

Author, Maintainer

Authors (4)

Han Chen

Author, Maintainer

Cong Pan

Author · added in 1.1.0

Duy Pham

Author

Xinyu Wang

Author

Contributors (3)

Eric Biggers

Contributor, Copyright holder · added in 1.3.0

Tino Reichardt

Contributor, Copyright holder · added in 1.3.0

Kenneth Westerman

Contributor · added in 1.0.2

Copyright holders (3)

Eric Biggers

Contributor, Copyright holder · added in 1.3.0

Tino Reichardt

Contributor, Copyright holder · added in 1.3.0

Meta Platforms, Inc. and affiliates

Copyright holder · added in 1.3.0

Package Timeline

15 releases. Pick two to compare their code metrics. R releases are shown for context.

R
R 4.6.0 released · 2026-04-24
1.4.5Latest
2026-02-12 · current release · diff ↗
1.4.4
2025-10-21 · diff ↗
1.4.3
2025-07-12 · diff ↗
unarchivedReturned to CRAN
2025-07-12
archivedRemoved from CRAN
2025-07-03
issues were not corrected in time
R
R 4.5.0 released · 2025-04-11
1.4.2
2024-07-26 · diff ↗
1.4.1
2024-04-28 · diff ↗
R
R 4.4.0 released · 2024-04-24
1.4.0
2024-04-23 · diff ↗
1.3.2
2023-11-17 · diff ↗
1.3.1
2023-10-12 · diff ↗
R
R 4.3.0 released · 2023-04-21
1.3.0
2023-04-18 · diff ↗
removedRemoved from CRAN
2023-04-05
policy violations Including misrepresentation of authorship Back on CRAN on 2023-04-18

Show 9 earlier events

1.2.0
2022-06-03 · diff ↗
R
R 4.2.0 released · 2022-04-22
1.1.1
2022-04-13 · diff ↗
1.1.0
2022-03-31 · diff ↗
1.0.2
2022-01-27 · diff ↗
1.0.1
2021-11-18 · diff ↗
R
R 4.1.0 released · 2021-05-18
1.0.0
2021-05-10
R
R 4.0.0 released · 2020-04-24

Package metadata

First published: 2023-04-18
Total releases: 15 / 3 yrs
License: GPL (>= 3) OSI
Minimum R: ≥ 3.2.0
Bundled data: 518 KB / 2 files
Download size: 1.9 MB
Installed size: not tracked yet
With dependencies: not tracked yet

Cite

Cite this package

Run in R for the authors' preferred citation:

citation("MAGEE")

Format

Chen, H., Meta Platforms, Inc. and affiliates, Biggers, E., Pan, C., Pham, D., Reichardt, T., Wang, X., & Westerman, K. (2026). MAGEE: Mixed Model Association Test for GEne-Environment Interaction (Version 1.4.5) [Computer software]. https://doi.org/10.32614/CRAN.package.MAGEE

This is what citation() produces when a package has no citation file of its own. If it prints something else, use that.

Cite the R Observatory

For a number measured here: a download total, a coverage figure, an archival date.

Format

APA

Balamuta, J. J. (2026). R Observatory: Metrics for MAGEE version 1.4.5 [Data set]. HJJB, LLC. Data release v2026-08-26. https://doi.org/10.5281/zenodo.21843040

From data release v2026-08-26, which the citation names so these numbers can be found later. More on citing and the projects behind them.

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