gINTomics
Bioc currentMulti-Omics data integration
Release Lineage
Entered 3.19 · May 1, 2024
Current · Requires R 4.6
Description
gINTomics is an R package for Multi-Omics data integration and visualization. gINTomics is designed to detect the association between the expression of a target and of its regulators, taking into account also their genomics modifications such as Copy Number Variations (CNV) and methylation. What is more, gINTomics allows integration results visualization via a Shiny-based interactive app.
None published for Bioconductor
Test coverage
Line coverage
–
Expression
–
Tests / Examples
–
Functions
154 17 exported
Complexity
3.3 avg / 18 max
Call network
154 nodes / 207 edges
Test coverage is not measured for Bioconductor packages; nodes fall back to a neutral fill.
Call graph
Open call graph →Lowest coverage
Per-function coverage is not measured for this package yet.
Code
Structure
Lines of code
12,107
Files
66
Compiled share
0%
Has compiled src
No
Language breakdown
API
Exported functions
18
Internal functions
137
Recent export changes
Testing
Has tests
Yes
Test-to-code ratio
0.23
testthat edition
3
Docs
Roxygen coverage
100%
Health & Security signals
Informational signals; not verdicts.
on.exit coverage
14.3%
Unsafe pattern score
0
Dep constraint coverage
0%
Secret pattern count
0
Bundled 3rd-party code
2 items
Portability & License
Min R version
4.4.0
System requirements
–
C++ standard
–
License
AGPL-3
License flags
SPDX valid, OSI approved
History
Versions
5
First release
2024-04-30
Latest release
2026-04-28
Avg cadence
182 days
Cold removal rate
–
Dep drift
2
LOC over versions
Per-file churn detail lives in the source pipeline: https://github.com/r-observatory/bioc-code-metrics.
Documentation
- Help pages
- 23 (1 internal)includes a package overview page
- Examples that run
- 100%20 run in a plain check
- Exported functions with examples
- 100%
- Documented parameters
- 100%
- Return-value docs
- 100%
- Help pages citing references
- 4%
- gINTomics vignette HTML
Repository practices
1 development-tooling and community-health practice detected across 1 family in the upstream repository
Checks run against github.com/angelovelle96/gintomics on 2026-10-11.
GitHub Pages site last deployed 2024-03-04
Datasets
| Name | Class | Size | Also in |
|---|---|---|---|
| mirna_hsa | data.frame | 1,914 × 13 | No other package |
| mmultiassay_ov | – | – | – |
3 internal objects are bundled for the package's own use and not listed here.
Topics
People
- Angelo Velle maintainer author
- Francesco Patane' author
- Chiara Romualdi author
Cite
Cite this package
Run in R for the authors' entry:
citation("gINTomics")The package provides a citation file, so citation() returns the authors' own entry.
It points to 10.1101/2025.10.07.680960.
Cite the R Observatory
For a number measured here: a download total, a coverage figure, an archival date.
From data release v2026-10-18, which the citation names so these numbers can be found later. More on citing and the projects behind them.