R Observatory: Metrics for ExpHunterSuite version 1.20.0

Balamuta, James Joseph

doi:10.5281/zenodo.21843040

ExpHunterSuite

Bioc current

Package for the Comprehensive Analysis of Transcriptomic Data

v1.20.0 · workflows · MIT + file LICENSE

View on Bioconductor ↗ Source ↗

Release Lineage

Entered 3.13 · May 20, 2021

Current · Requires R 4.6

1.0 In 11 of 49 releases 3.23

Description

The ExpHunterSuite implements a comprehensive protocol for the analysis of transcriptional data using established R packages and combines their results. It covers key steps including differential expression analysis, co-expression analysis, and functional enrichment for RNA-seq data. The package provides interactive R functions as well as command-line scripts that wrap these functions.

Test coverage

Line coverage

–

Expression

–

Tests / Examples

–

Functions

217 27 exported

Complexity

3.2 avg / 37 max

Call network

217 nodes / 169 edges

Test coverage is not measured for Bioconductor packages; nodes fall back to a neutral fill.

Call graph

Open call graph →

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Lowest coverage

Per-function coverage is not measured for this package yet.

Code

Structure

Lines of code

9,870

Files

162

Compiled share

0%

Has compiled src

No

Language breakdown

R 6,965 (70.6%)Tests 651 (6.6%)Docs 1,482 (15%)Vignettes 772 (7.8%)

API

Exported functions

27

Internal functions

181

Testing & CI

Has tests

Yes

Test-to-code ratio

0.09

testthat edition

3

CI present

Yes

CI type

["github-actions"]

PR gated

Yes

Docs

Roxygen coverage

100%

Health & Security signals

Informational signals; not verdicts.

on.exit coverage

0%

Unsafe pattern score

6

Dep constraint coverage

0%

Secret pattern count

0

Bundled 3rd-party code

2 items

Portability & License

Min R version

4.1.0

System requirements

–

C++ standard

–

License

MIT + file LICENSE

License flags

SPDX valid, OSI approved

History

Versions

11

First release

2021-05-19

Latest release

2026-04-28

Avg cadence

182 days

Cold removal rate

100%

Dep drift

24

LOC over versions

Per-file churn detail lives in the source pipeline: https://github.com/r-observatory/bioc-code-metrics.

Documentation

READMEYes · 296 wordsVignettesYes · dynamicpkgdown siteNoNEWSYes · 33% structuredCode of conductNoContributing guideNo

Examples that run: 96%
Documented parameters: 100%
Return-value docs: 81%
References docs: 0%

Topics

Workflow › GeneExpressionWorkflow

People

Cite

Cite this package

Run in R for the authors' preferred citation:

citation("ExpHunterSuite")

Format

Perkins, J., Bautista Moreno, R., Claros, M. G., Córdoba Caballero, J., García Ranea, J. A., Gonzalez Gayte, I., Moreno Jabato, F., Rojano Rivera, E., & Seoane Zonjic, P. (2026). ExpHunterSuite: Package for the Comprehensive Analysis of Transcriptomic Data (Version 1.20.0) [Computer software]. https://bioconductor.org/packages/ExpHunterSuite

This is what citation() produces when a package has no citation file of its own. If it prints something else, use that.

Cite the R Observatory

For a number measured here: a download total, a coverage figure, an archival date.

Format

APA

Balamuta, J. J. (2026). R Observatory: Metrics for ExpHunterSuite version 1.20.0 [Data set]. HJJB, LLC. Data release v2026-08-24. https://doi.org/10.5281/zenodo.21843040

From data release v2026-08-24, which the citation names so these numbers can be found later. More on citing and the projects behind them.

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