mitology
Bioc currentStudy of mitochondrial activity from RNA-seq data
Release Lineage
Entered 3.21 · Apr 16, 2025
Current · Requires R 4.6
Description
mitology allows to study the mitochondrial activity throught high-throughput RNA-seq data. It is based on a collection of genes whose proteins localize in to the mitochondria. From these, mitology provides a reorganization of the pathways related to mitochondria activity from Reactome and Gene Ontology. Further a ready-to-use implementation of MitoCarta3.0 pathways is included.
None published for Bioconductor
Test coverage
Line coverage
–
Expression
–
Tests / Examples
–
Functions
13 6 exported
Complexity
4.2 avg / 8 max
Call network
13 nodes / 18 edges
Test coverage is not measured for Bioconductor packages; nodes fall back to a neutral fill.
Call graph
Open call graph →Lowest coverage
Per-function coverage is not measured for this package yet.
Code
Structure
Lines of code
1,108
Files
32
Compiled share
0%
Has compiled src
No
Language breakdown
API
Exported functions
6
Internal functions
7
Recent export changes
Testing
Has tests
Yes
Test-to-code ratio
0.15
testthat edition
–
Docs
Roxygen coverage
100%
Health & Security signals
Informational signals; not verdicts.
on.exit coverage
–
Unsafe pattern score
0
Dep constraint coverage
0%
Secret pattern count
0
Bundled 3rd-party code
2 items
Portability & License
Min R version
4.5.0
System requirements
–
C++ standard
–
License
AGPL-3
License flags
SPDX valid, OSI approved
History
Versions
3
First release
2025-04-15
Latest release
2026-04-28
Avg cadence
189 days
Cold removal rate
–
Dep drift
2
LOC over versions
Per-file churn detail lives in the source pipeline: https://github.com/r-observatory/bioc-code-metrics.
Documentation
- Help pages
- 9 (1 internal)includes a package overview page
- Examples that run
- 100%6 run in a plain check
- Exported functions with examples
- 100%
- Documented parameters
- 100%
- Return-value docs
- 100%
- Help pages citing references
- 0%
- mitology vignette HTML
Repository practices
1 development-tooling and community-health practice detected across 1 family in the upstream repository
Checks run against github.com/caluralab/mitology on 2026-10-22.
Datasets
| Name | Class | Size | Also in |
|---|---|---|---|
| MitoGenesDB | data.frame | 2,996 × 3 | No other package |
| ovse | – | – | – |
9 internal objects are bundled for the package's own use and not listed here.
Topics
People
- Stefania Pirrotta maintainer author
- Enrica Calura author funder
Cite
Cite this package
Run in R for the authors' entry:
citation("mitology")The package provides a citation file, so citation() returns the authors' own entry.
It points to 10.1101/2024.11.27.625451.
Cite the R Observatory
For a number measured here: a download total, a coverage figure, an archival date.
From data release v2026-10-23, which the citation names so these numbers can be found later. More on citing and the projects behind them.