scTensor
Bioc currentDetection of cell-cell interaction from single-cell RNA-seq dataset by tensor decomposition
Release Lineage
Entered 3.9 · May 3, 2019
Current · Requires R 4.6
Description
The algorithm is based on the non-negative tucker decomposition (NTD2) of nnTensor.
None published for Bioconductor
Test coverage
Line coverage
–
Expression
–
Tests / Examples
–
Functions
154 2 exported
Complexity
3.6 avg / 71 max
Call network
154 nodes / 191 edges
Test coverage is not measured for Bioconductor packages; nodes fall back to a neutral fill.
Call graph
Open call graph →Lowest coverage
Per-function coverage is not measured for this package yet.
Code
Structure
Lines of code
8,635
Files
97
Compiled share
0%
Has compiled src
No
Language breakdown
API
Exported functions
2
Internal functions
152
Recent export changes
Testing
Has tests
Yes
Test-to-code ratio
0.02
testthat edition
–
Docs
Roxygen coverage
100%
Health & Security signals
Informational signals; not verdicts.
on.exit coverage
0%
Unsafe pattern score
114
Dep constraint coverage
13.5%
Secret pattern count
0
Bundled 3rd-party code
2 items
Portability & License
Min R version
4.1.0
System requirements
–
C++ standard
–
License
Artistic-2.0
License flags
SPDX valid, OSI approved
History
Versions
15
First release
2019-09-23
Latest release
2026-04-28
Avg cadence
182 days
Cold removal rate
100%
Dep drift
3
LOC over versions
Per-file churn detail lives in the source pipeline: https://github.com/r-observatory/bioc-code-metrics.
Documentation
- Help pages
- 15includes a package overview page
- Examples that run
- 100%14 run in a plain check (1 of them under a condition)
- Exported functions with examples
- 100%
- Documented parameters
- 100%
- Return-value docs
- 100%
- Help pages citing references
- 20%
Repository practices
Checks read the Bioconductor git repository (git.bioconductor.org), branch RELEASE_3_23.
No development-tooling practices detected in the Bioconductor git repository.
Datasets
| Name | Class | Size | Also in |
|---|---|---|---|
| GermMale | matrix | 242 × 852 | No other package |
| labelGermMale | vector | 852 elements | No other package |
| m | vector | 10,000 elements | No other package |
| tsneGermMale | list | 7 elements | No other package |
| v | vector | 10,000 elements | No other package |
Topics
People
- Koki Tsuyuzaki author maintainer
- Kozo Nishida author
Cite
Cite this package
Run in R for the authors' preferred citation:
citation("scTensor")This package has no citation file, so citation() returns this entry built from DESCRIPTION.
Cite the R Observatory
For a number measured here: a download total, a coverage figure, an archival date.
From data release v2026-10-21, which the citation names so these numbers can be found later. More on citing and the projects behind them.