omicsPrint
Bioc currentCross omic genetic fingerprinting
Release Lineage
Entered 3.7 · May 1, 2018
Current · Requires R 4.6
Description
omicsPrint provides functionality for cross omic genetic fingerprinting, for example, to verify sample relationships between multiple omics data types, i.e. genomic, transcriptomic and epigenetic (DNA methylation).
None published for Bioconductor
Test coverage
Line coverage
–
Expression
–
Tests / Examples
–
Functions
10 3 exported
Complexity
6.2 avg / 18 max
Call network
10 nodes / 7 edges
Test coverage is not measured for Bioconductor packages; nodes fall back to a neutral fill.
Call graph
Open call graph →Lowest coverage
Per-function coverage is not measured for this package yet.
Code
Structure
Lines of code
2,289
Files
21
Compiled share
0%
Has compiled src
No
Language breakdown
API
Exported functions
3
Internal functions
7
Recent export changes
Testing
Has tests
Yes
Test-to-code ratio
0.25
testthat edition
–
Docs
Roxygen coverage
100%
Health & Security signals
Informational signals; not verdicts.
on.exit coverage
–
Unsafe pattern score
0
Dep constraint coverage
0%
Secret pattern count
0
Bundled 3rd-party code
2 items
Portability & License
Min R version
3.5
System requirements
–
C++ standard
–
License
GPL (>= 2)
License flags
SPDX valid, OSI approved
History
Versions
17
First release
2018-04-30
Latest release
2026-04-28
Avg cadence
182 days
Cold removal rate
–
Dep drift
0
LOC over versions
Per-file churn detail lives in the source pipeline: https://github.com/r-observatory/bioc-code-metrics.
Documentation
- Help pages
- 5
- Examples that run
- 100%5 run in a plain check
- Exported functions with examples
- 100%
- Documented parameters
- 95%
- Return-value docs
- 100%
- Help pages citing references
- 20%
Repository practices
Checks read the Bioconductor git repository (git.bioconductor.org), branch RELEASE_3_23.
No development-tooling practices detected in the Bioconductor git repository.
Datasets
| Name | Class | Size | Also in |
|---|---|---|---|
| hg19.GoNLsnps | – | – | – |
| hm450.manifest.pop.GoNL | – | – | – |
Topics
People
- Davy Cats maintainer
- Maarten van Iterson author
Cite
Cite this package
Run in R for the authors' entry:
citation("omicsPrint")The package provides a citation file, so citation() returns the authors' own entry.
It points to 10.1093/bioinformatics/bty062.
Cite the R Observatory
For a number measured here: a download total, a coverage figure, an archival date.
From data release v2026-10-25, which the citation names so these numbers can be found later. More on citing and the projects behind them.