Chicago
Bioc currentCHiCAGO: Capture Hi-C Analysis of Genomic Organization
Release Lineage
Entered 3.3 · May 4, 2016
Current · Requires R 4.6
Description
A pipeline for analysing Capture Hi-C data.
Test coverage
Line coverage
–
Expression
–
Tests / Examples
–
Functions
59 22 exported
Complexity
6.1 avg / 54 max
Call network
59 nodes / 77 edges
Test coverage is not measured for Bioconductor packages; nodes fall back to a neutral fill.
Call graph
Open call graph →Lowest coverage
Per-function coverage is not measured for this package yet.
Code
Structure
Lines of code
4,791
Files
59
Compiled share
0%
Has compiled src
No
Language breakdown
API
Exported functions
24
Internal functions
37
Testing & CI
Has tests
Yes
Test-to-code ratio
0.05
testthat edition
–
CI present
No
CI type
[]
PR gated
No
Docs
Roxygen coverage
100%
Health & Security signals
Informational signals; not verdicts.
on.exit coverage
0%
Unsafe pattern score
15
Dep constraint coverage
0%
Secret pattern count
0
Bundled 3rd-party code
2 items
Portability & License
Min R version
3.3.1
System requirements
–
C++ standard
–
License
Artistic-2.0
License flags
SPDX valid, OSI approved
History
Versions
21
First release
2016-09-30
Latest release
2026-04-28
Avg cadence
182 days
Cold removal rate
–
Dep drift
4
LOC over versions
Per-file churn detail lives in the source pipeline: https://github.com/r-observatory/bioc-code-metrics.
Documentation
- Examples that run
- 100%
- Documented parameters
- 98%
- Return-value docs
- 100%
- References docs
- 4%
Topics
Depended on by (2)
Bioconductor (2)
People
Mikhail Spivakov
Cite
Cite this package
Run in R for the authors' preferred citation:
citation("Chicago")Cite the R Observatory
For a number measured here: a download total, a coverage figure, an archival date.
From data release v2026-08-22, which the citation names so these numbers can be found later. More on citing and the projects behind them.