GOaGO
Bioc currentGene Ontology enrichment analysis of gene pairs
Release Lineage
Entered 3.23 · Apr 29, 2026
Current · Requires R 4.6
Description
GO-a-GO annotates Gene Ontology terms that are enriched in a given set of gene pairs. The enrichment is calculated from a permutation test for overrepresentation of gene pairs that are associated with a shared term. Such gene pairs are counted for the original set of gene pairs and compared against randomized sets in which the structure of the pairs is preserved, but the gene identities (including the associated terms) are permuted.
None published for Bioconductor
Test coverage
Line coverage
–
Expression
–
Tests / Examples
–
Functions
16 9 exported
Complexity
2.7 avg / 6 max
Call network
16 nodes / 12 edges
Test coverage is not measured for Bioconductor packages; nodes fall back to a neutral fill.
Call graph
Open call graph →Lowest coverage
Per-function coverage is not measured for this package yet.
Code
Structure
Lines of code
2,325
Files
35
Compiled share
0%
Has compiled src
No
Language breakdown
API
Exported functions
9
Internal functions
6
Recent export changes
Testing
Has tests
Yes
Test-to-code ratio
0.23
testthat edition
3
Docs
Roxygen coverage
100%
Health & Security signals
Informational signals; not verdicts.
on.exit coverage
–
Unsafe pattern score
0
Dep constraint coverage
0%
Secret pattern count
0
Bundled 3rd-party code
2 items
Portability & License
Min R version
4.4.0
System requirements
–
C++ standard
–
License
Artistic-2.0
License flags
SPDX valid, OSI approved
History
Versions
1
First release
2026-05-06
Latest release
2026-05-06
Avg cadence
–
Cold removal rate
–
Dep drift
0
Per-file churn detail lives in the source pipeline: https://github.com/r-observatory/bioc-code-metrics.
Documentation
- Help pages
- 13 (1 internal)includes a package overview page
- Examples that run
- 100%9 run in a plain check
- Exported functions with examples
- 100%
- Documented parameters
- 100%
- Return-value docs
- 100%
- Help pages citing references
- 8%
Repository practices
1 development-tooling and community-health practice detected across 1 family in the upstream repository
Checks run against github.com/ajank/goago on 2026-10-22.
Datasets
| Name | Class | Size | Also in |
|---|---|---|---|
| genePairsGM12878 | data.table | 2,339 × 13 | No other package |
Topics
People
- Aleksander Jankowski author maintainer
Cite
Cite this package
Run in R for the authors' preferred citation:
citation("GOaGO")This package has no citation file, so citation() returns this entry built from DESCRIPTION.
Cite the R Observatory
For a number measured here: a download total, a coverage figure, an archival date.
From data release v2026-10-25, which the citation names so these numbers can be found later. More on citing and the projects behind them.