Description
Toolkit for processing and calling interactions in capture Hi-C data. Converts BAM files into counts of reads linking restriction fragments, and identifies pairs of fragments that interact more than expected by chance. Significant interactions are identified by comparing the observed read count to the expected background rate from a count regression model.
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| Flavor | Status |
|---|---|
| r-devel-linux-x86_64-debian-clang | OK |
| r-devel-linux-x86_64-debian-gcc | OK |
| r-devel-linux-x86_64-fedora-clang | NOTE |
| r-devel-linux-x86_64-fedora-gcc | NOTE |
| r-devel-macos-arm64 | OK |
| r-devel-windows-x86_64 | OK |
| r-oldrel-macos-arm64 | NOTE |
| r-oldrel-macos-x86_64 | NOTE |
| r-oldrel-windows-x86_64 | NOTE |
| r-patched-linux-x86_64 | OK |
| r-release-linux-x86_64 | OK |
| r-release-macos-arm64 | OK |
| r-release-macos-x86_64 | OK |
| r-release-windows-x86_64 | OK |
Check details (5 non-OK)
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r-devel-linux-x86_64-fedora-clang
dependencies in R code
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r-devel-linux-x86_64-fedora-gcc
dependencies in R code
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Check History
NOTE 8 OK · 6 NOTE · 0 WARNING · 0 ERROR · 0 FAILURE Mar 10, 2026
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r-devel-linux-x86_64-debian-gcc
CRAN incoming feasibility
Maintainer: ‘Syed Haider <Syed.Haider@icr.ac.uk>’ Additional repositories with no packages: http://R-Forge.R-project.org/
NOTE
r-devel-linux-x86_64-fedora-clang
dependencies in R code
Namespaces in Imports field not imported from: 'knitr' 'rmarkdown' All declared Imports should be used.
NOTE
r-devel-linux-x86_64-fedora-gcc
dependencies in R code
Namespaces in Imports field not imported from: 'knitr' 'rmarkdown' All declared Imports should be used.
NOTE
r-oldrel-macos-arm64
package dependencies
Package suggested but not available for checking: ‘countreg’
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r-oldrel-macos-x86_64
package dependencies
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r-oldrel-windows-x86_64
package dependencies
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Dependency Network
Version History
new
0.1.8
Mar 10, 2026
new
0.1.0
Aug 29, 2018