GAPGOM
Bioc removedGAPGOM (novel Gene Annotation Prediction and other GO Metrics)
Release Lineage
Entered 3.9 · May 3, 2019
Removed after 3.17 · Apr 26, 2023
Description
Collection of various measures and tools for lncRNA annotation prediction put inside a redistributable R package. The package contains two main algorithms; lncRNA2GOA and TopoICSim. lncRNA2GOA tries to annotate novel genes (in this specific case lncRNAs) by using various correlation/geometric scoring methods on correlated expression data. After correlating/scoring, the results are annotated and enriched. TopoICSim is a topologically based method, that compares gene similarity based on the topology of the GO DAG by information content (IC) between GO terms.
None published for Bioconductor
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People
- Rezvan Ehsani author maintainer
- Finn Drabløs author
- Casper van Mourik author
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