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ChIPXpress

Bioc current

ChIPXpress: enhanced transcription factor target gene identification from ChIP-seq and ChIP-chip data using publicly available gene expression profiles

v1.56.0 · software · GPL(>=2)
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Release Lineage

Entered 2.11 · Oct 3, 2012

Current · Requires R 4.6

1.0 In 28 of 49 releases 3.23

Description

ChIPXpress takes as input predicted TF bound genes from ChIPx data and uses a corresponding database of gene expression profiles downloaded from NCBI GEO to rank the TF bound targets in order of which gene is most likely to be functional TF target.

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Topics

Software › AssayDomain › ChIPchip
Software › Technology › Sequencing › ChIPSeq

People

George Wu