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EGAD

Bioc current

Extending guilt by association by degree

v1.40.0 · software · GPL-2

Release Lineage

Entered 3.3 · May 4, 2016

Current · Requires R 4.6

1.0 In 21 of 49 releases 3.23

Description

The package implements a series of highly efficient tools to calculate functional properties of networks based on guilt by association methods.

Test coverage

Line coverage

Expression

Tests / Examples

Functions

44 44 exported

Complexity

1.6 avg / 6 max

Call network

44 nodes / 21 edges

Test coverage is not measured for Bioconductor packages; nodes fall back to a neutral fill.

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Lowest coverage

Per-function coverage is not measured for this package yet.

Code

Structure

Lines of code

5,136

Files

169

Compiled share

0%

Has compiled src

No

Language breakdown

R 2,210 (43%)Tests 92 (1.8%)Docs 1,716 (33.4%)Vignettes 1,118 (21.8%)

API

Exported functions

44

Internal functions

0

Testing & CI

Has tests

Yes

Test-to-code ratio

0.04

testthat edition

CI present

No

CI type

[]

PR gated

No

Docs

Roxygen coverage

100%

Health & Security signals

Informational signals; not verdicts.

on.exit coverage

0%

Unsafe pattern score

0

Dep constraint coverage

0%

Secret pattern count

0

Bundled 3rd-party code

2 items

Portability & License

Min R version

3.5

System requirements

C++ standard

License

GPL-2

License flags

SPDX valid, OSI approved

History

Versions

21

First release

2016-08-18

Latest release

2026-04-28

Avg cadence

182 days

Cold removal rate

Dep drift

5

LOC over versions

v3.3: 5,066 LOCv3.4: 5,065 LOCv3.5: 5,064 LOCv3.6: 5,064 LOCv3.7: 5,065 LOCv3.8: 5,065 LOCv3.9: 5,065 LOCv3.10: 5,065 LOCv3.11: 5,113 LOCv3.12: 5,136 LOCv3.13: 5,136 LOCv3.14: 5,136 LOCv3.15: 5,136 LOCv3.16: 5,136 LOCv3.17: 5,136 LOCv3.18: 5,136 LOCv3.19: 5,136 LOCv3.20: 5,136 LOCv3.21: 5,136 LOCv3.22: 5,136 LOCv3.23: 5,136 LOC

Per-file churn detail lives in the source pipeline: https://github.com/r-observatory/bioc-code-metrics.

Documentation

Documentation
READMEYes · 316 wordsVignettesYes · dynamicpkgdown siteNoNEWSNoCode of conductNoContributing guideNo
Examples that run
100%
Documented parameters
100%
Return-value docs
100%
References docs
0%

Topics

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