Packages
485 packages on Bioconductor tagged ExperimentData or Epigenetics or ExperimentHub, most distinct IPs first
ExperimentData, Epigenetics and ExperimentHub in Topics
| Package | Maintainer | Category | Latest version | Distinct IPs a month | Needs |
|---|---|---|---|---|---|
| limma Linear Models for Microarray and Omics DataGordon Smyth | Gordon Smyth | software | 10 Aug 2026 | 45,965 | 6 |
| ggtree an R package for visualization of tree and annotation dataGuangchuang Yu | Guangchuang Yu | software | 29 Oct 2026 | 34,372 | 79 |
| edgeR Empirical Analysis of Digital Gene Expression Data in RYunshun Chen | Yunshun Chen | software | 19 Oct 2026 | 32,392 | 10 |
| TCGAbiolinksGUI.data Data for the TCGAbiolinksGUI packageTiago Chedraoui Silva | Tiago Chedraoui Silva | experiment | 5 May 2026 | 5,758 | 0 |
| celldex Index of Reference Cell Type DatasetsAaron Lun | Aaron Lun | experiment | 5 May 2026 | 5,717 | 95 |
| bumphunter Bump HunterTamilselvi Guharaj | Tamilselvi Guharaj | software | 28 Apr 2026 | 4,268 | 83 |
| ALL A data packageRobert Gentleman | Robert Gentleman | experiment | 5 May 2026 | 4,171 | 7 |
| minfi Analyze Illumina Infinium DNA methylation arraysKasper Daniel Hansen | Kasper Daniel Hansen | software | 28 Apr 2026 | 4,041 | 143 |
| HSMMSingleCell Single-cell RNA-Seq for differentiating human skeletal muscle myoblasts (HSMM)Cole Trapnell | Cole Trapnell | experiment | 5 May 2026 | 3,553 | 0 |
| variancePartition Quantify and interpret drivers of variation in multilevel gene expression experimentsGabriel E. Hoffman | Gabriel E. Hoffman | software | 28 Apr 2026 | 3,211 | 99 |
| airway RangedSummarizedExperiment for RNA-Seq in airway smooth muscle cells, by Himes et al PLoS One 2014Michael Love | Michael Love | experiment | 5 May 2026 | 2,854 | 25 |
| DiffBind Differential Binding Analysis of ChIP-Seq Peak DataRory Stark | Rory Stark | software | 21 Jul 2026 | 2,490 | 141 |
| tximeta Transcript Quantification Import with Automatic MetadataMichael Love | Michael Love | software | 26 Oct 2026 | 2,485 | 108 |
| geneLenDataBase Lengths of mRNA transcripts for a number of genomesFederico Marini | Federico Marini | experiment | 5 May 2026 | 2,378 | 98 |
| scRNAseq Collection of Public Single-Cell RNA-Seq DatasetsAaron Lun | Aaron Lun | experiment | 5 May 2026 | 2,314 | 121 |
| bcellViper Human B-cell transcriptional interactome and normal human B-cell expression dataMariano Javier Alvarez | Mariano Javier Alvarez | experiment | 5 May 2026 | 2,177 | 7 |
| dorothea Collection Of Human And Mouse TF RegulonsPau Badia-i-Mompel | Pau Badia-i-Mompel | experiment | 4 Nov 2025 | 2,113 | 45 |
| DMRcate Methylation array and sequencing spatial analysis methodsTim Peters | Tim Peters | software | 3 May 2026 | 1,838 | 224 |
| EpiDISH Epigenetic Dissection of Intra-Sample-HeterogeneityShijie C. Zheng | Shijie C. Zheng | software | 28 Apr 2026 | 1,793 | 63 |
| multiMiR Integration of multiple microRNA-target databases with their disease and drug associationsSpencer Mahaffey | Spencer Mahaffey | software | 28 Apr 2026 | 1,569 | 53 |
| pasilla Data package with per-exon and per-gene read counts of RNA-seq samples of Pasilla knock-down by Brooks et al., Genome Research 2011.Alejandro Reyes | Alejandro Reyes | experiment | 5 May 2026 | 1,554 | 108 |
| TOAST Tools for the analysis of heterogeneous tissuesZiyi Li | Ziyi Li | software | 28 Apr 2026 | 1,454 | 102 |
| tximportData tximportDataMichael Love | Michael Love | experiment | 5 May 2026 | 1,330 | 0 |
| RnBeads RnBeadsFabian Mueller | Fabian Mueller | software | 28 Apr 2026 | 1,302 | 170 |
| cn.mops cn.mops - Mixture of Poissons for CNV detection in NGS dataGundula Povysil | Gundula Povysil | software | 28 Apr 2026 | 1,256 | 30 |
| msdata Various Mass Spectrometry raw data example filesSteffen Neumann | Steffen Neumann | experiment | 5 May 2026 | 1,252 | 0 |
| sesameData Supporting Data for SeSAMe PackageWanding Zhou | Wanding Zhou | experiment | 5 May 2026 | 1,250 | 72 |
| affydata Affymetrix Data for Demonstration PurposeRobert D Shear | Robert D Shear | experiment | 5 May 2026 | 1,244 | 12 |
| golubEsets exprSets for golub leukemia dataVince Carey | Vince Carey | experiment | 5 May 2026 | 1,207 | 7 |
| dmrseq Detection and inference of differentially methylated regions from Whole Genome Bisulfite SequencingKeegan Korthauer | Keegan Korthauer | software | 28 Apr 2026 | 1,201 | 149 |