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variancePartition

Bioc current

Quantify and interpret drivers of variation in multilevel gene expression experiments

v1.42.0 · software · GPL-2
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Release Lineage

Entered 3.2 · Oct 14, 2015

Current · Requires R 4.6

1.0 In 22 of 49 releases 3.23

Description

Quantify and interpret multiple sources of biological and technical variation in gene expression experiments. Uses a linear mixed model to quantify variation in gene expression attributable to individual, tissue, time point, or technical variables. Includes dream differential expression analysis for repeated measures.

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Topics

Software › Technology › Sequencing › RNASeq
Software › AssayDomain › GeneExpression
Software › BiologicalQuestion › GeneSetEnrichment
Software › BiologicalQuestion › DifferentialExpression
Software › WorkflowStep › BatchEffect
Software › WorkflowStep › QualityControl
Software › StatisticalMethod › Regression
Software › ResearchField › Epigenetics
Software › ResearchField › FunctionalGenomics
Software › ResearchField › Transcriptomics
Software › WorkflowStep › Normalization
Software › WorkflowStep › Preprocessing
Software › Technology › Microarray
Software › ResearchField › Immunology › ImmunoOncology
Software

Depended on by (6)

Bioconductor (6)

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