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Topic: Normalization

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Release: Release 3.10 (2019)

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109 packages on Bioconductor, most distinct IPs first

Normalization in Topics

PackageMaintainerCategoryLatest versionDistinct IPs a monthNeeds
limma
Linear Models for Microarray and Omics DataGordon Smyth		Gordon Smythsoftware10 Aug 202645,9656
edgeR
Empirical Analysis of Digital Gene Expression Data in RYunshun Chen		Yunshun Chensoftware19 Oct 202632,39210
DESeq2
Differential gene expression analysis based on the negative binomial distributionMichael Love		Michael Lovesoftware28 Apr 202632,07254
scater
Single-Cell Analysis Toolkit for Gene Expression Data in RAlan O'Callaghan		Alan O'Callaghansoftware2 Jul 202612,63578
sva
Surrogate Variable AnalysisJeffrey T. Leek		Jeffrey T. Leeksoftware5 May 202610,80468
scran
Methods for Single-Cell RNA-Seq Data AnalysisAaron Lun		Aaron Lunsoftware28 Apr 202610,13962
batchelor
Single-Cell Batch Correction MethodsAaron Lun		Aaron Lunsoftware28 Apr 20265,72056
AUCell
AUCell: Analysis of 'gene set' activity in single-cell RNA-seq data (e.g. identify cells with specific gene signatures)Gert Hulselmans		Gert Hulselmanssoftware29 Apr 20264,610115
minfi
Analyze Illumina Infinium DNA methylation arraysKasper Daniel Hansen		Kasper Daniel Hansensoftware28 Apr 20264,041143
variancePartition
Quantify and interpret drivers of variation in multilevel gene expression experimentsGabriel E. Hoffman		Gabriel E. Hoffmansoftware28 Apr 20263,21199
metagenomeSeq
Statistical analysis for sparse high-throughput sequencingJoseph N. Paulson		Joseph N. Paulsonsoftware28 Apr 20262,92432
Wrench
Wrench normalization for sparse count dataHector Corrada Bravo		Hector Corrada Bravosoftware28 Apr 20262,61911
DiffBind
Differential Binding Analysis of ChIP-Seq Peak DataRory Stark		Rory Starksoftware21 Jul 20262,490141
missMethyl
Analysing Illumina HumanMethylation BeadChip DataBelinda Phipson		Belinda Phipsonsoftware12 May 20261,987169
Maaslin2
"Multivariable Association Discovery in Population-scale Meta-omics Studies"Sagun Maharjan		Sagun Maharjansoftware28 Apr 20261,690133
ChAMP
Chip Analysis Methylation Pipeline for Illumina HumanMethylation450 and EPICYuan Tian		Yuan Tiansoftware28 Apr 20261,643266
MSstats
Protein Significance Analysis in DDA, SRM and DIA for Label-free or Label-based Proteomics ExperimentsMeena Choi		Meena Choisoftware28 Apr 20261,586100
csaw
ChIP-Seq Analysis with WindowsAaron Lun		Aaron Lunsoftware28 Apr 20261,53646
Cardinal
A mass spectrometry imaging toolbox for statistical analysisKylie Ariel Bemis		Kylie Ariel Bemissoftware28 Apr 20261,40531
fishpond
Fishpond: downstream methods and tools for expression dataMichael Love		Michael Lovesoftware28 Apr 20261,36354
ACME
Algorithms for Calculating Microarray Enrichment (ACME)Sean Davis		Sean Davissoftware28 Apr 20261,2787
CATALYST
Cytometry dATa anALYSis ToolsHelena L. Crowell		Helena L. Crowellsoftware28 Apr 20261,265176
quantro
A test for when to use quantile normalizationStephanie Hicks		Stephanie Hickssoftware28 Apr 20261,244153
singleCellTK
Comprehensive and Interactive Analysis of Single Cell RNA-Seq DataJoshua David Campbell		Joshua David Campbellsoftware29 Apr 20261,218392
BASiCS
Bayesian Analysis of Single-Cell Sequencing dataCatalina Vallejos		Catalina Vallejossoftware29 Apr 20261,206129
affylmGUI
GUI for limma Package with Affymetrix MicroarraysGordon Smyth		Gordon Smythsoftware28 Apr 20261,19455
gCrisprTools
Suite of Functions for Pooled Crispr Screen QC and AnalysisRussell Bainer		Russell Bainersoftware28 Apr 20261,17481
limmaGUI
GUI for limma Package With Two Color MicroarraysGordon Smyth		Gordon Smythsoftware28 Apr 20261,16511
diffHic
Differential Analysis of Hi-C DataAaron Lun		Aaron Lunsoftware28 Apr 20261,15974
HiCcompare
HiCcompare: Joint normalization and comparative analysis of multiple Hi-C datasetsMikhail Dozmorov		Mikhail Dozmorovsoftware28 Apr 20261,15174