limmaGUI
Bioc currentGUI for limma Package With Two Color Microarrays
Release Lineage
Entered 1.4 · May 17, 2004
Current · Requires R 4.6
Description
A Graphical User Interface for differential expression analysis of two-color microarray data using the limma package.
None published for Bioconductor
Test coverage
Line coverage
–
Expression
–
Tests / Examples
–
Functions
134 0 exported
Complexity
12.4 avg / 178 max
Call network
134 nodes / 344 edges
Test coverage is not measured for Bioconductor packages; nodes fall back to a neutral fill.
Call graph
Open call graph →Lowest coverage
Per-function coverage is not measured for this package yet.
Code
Structure
Lines of code
13,362
Files
239
Compiled share
0%
Has compiled src
No
Language breakdown
API
Exported functions
132
Internal functions
1
Testing
Has tests
No
Test-to-code ratio
0.00
testthat edition
–
Docs
Roxygen coverage
–
Health & Security signals
Informational signals; not verdicts.
on.exit coverage
2.7%
Unsafe pattern score
114
Dep constraint coverage
0%
Secret pattern count
0
Bundled 3rd-party code
2 items
Portability & License
Min R version
–
System requirements
–
C++ standard
–
License
GPL (>=2)
License flags
not SPDX, not OSI
History
Versions
45
First release
2004-08-23
Latest release
2026-04-28
Avg cadence
182 days
Cold removal rate
100%
Dep drift
17
LOC over versions
Per-file churn detail lives in the source pipeline: https://github.com/r-observatory/bioc-code-metrics.
Documentation
- Help pages
- 2
- Examples that run
- no examples
- Exported functions with examples
- 0%
- Documented parameters
- not tracked
- Return-value docs
- not tracked
- Help pages citing references
- 0%
- Extracting limma objects from limmaGUI files PDF
- limmaGUI Vignette PDF
- LinModIntro.pdf PDF
- about.html HTML
- CustMenu.html HTML
- import.html HTML
- index.html HTML
- InputFiles.html HTML
- lgDevel.html HTML
- windowsFocus.html HTML
Repository practices
Checks read the Bioconductor git repository (git.bioconductor.org), branch RELEASE_3_23.
No development-tooling practices detected in the Bioconductor git repository.
Topics
People (from the free-text Author field)
- James Wettenhall author
- Gordon Smyth author
- Keith Satterley contributor
Cite
Cite this package
Run in R for the authors' entry:
citation("limmaGUI")The package provides a citation file, so citation() returns the authors' own entry.
Cite the R Observatory
For a number measured here: a download total, a coverage figure, an archival date.
From data release v2026-10-20, which the citation names so these numbers can be found later. More on citing and the projects behind them.