Packages
104 packages on Bioconductor tagged Spatial or MicroarrayData or Infrastructure, most distinct IPs first
Spatial, MicroarrayData and Infrastructure in Topics
| Package | Maintainer | Category | Latest version | Distinct IPs a month | Needs |
|---|---|---|---|---|---|
| IRanges Foundation of integer range manipulation in BioconductorHervé Pagès | Hervé Pagès | software | 28 Apr 2026 | 68,817 | 8 |
| Biobase Biobase: Base functions for BioconductorBioconductor Package Maintainer | Bioconductor Package Maintainer | software | 28 Apr 2026 | 64,555 | 6 |
| Biostrings Efficient manipulation of biological stringsHervé Pagès | Hervé Pagès | software | 2 Sep 2026 | 58,962 | 14 |
| GenomicRanges Representation and manipulation of genomic intervalsHervé Pagès | Hervé Pagès | software | 28 Apr 2026 | 56,974 | 10 |
| limma Linear Models for Microarray and Omics DataGordon Smyth | Gordon Smyth | software | 10 Aug 2026 | 45,965 | 6 |
| Rsamtools Binary alignment (BAM), FASTA, variant call (BCF), and tabix file importBioconductor Package Maintainer | Bioconductor Package Maintainer | software | 28 Apr 2026 | 30,337 | 28 |
| rhdf5 R Interface to HDF5Hugo Gruson | Hugo Gruson | software | 14 Sep 2026 | 27,620 | 8 |
| rtracklayer R interface to genome annotation files and the UCSC genome browserMichael Lawrence | Michael Lawrence | software | 28 Apr 2026 | 26,119 | 56 |
| GenomicFeatures Query the gene models of a given organism/assemblyH. Pagès | H. Pagès | software | 28 Apr 2026 | 19,218 | 74 |
| preprocessCore A collection of pre-processing functionsBen Bolstad | Ben Bolstad | software | 28 Apr 2026 | 19,020 | 1 |
| GEOquery Get data from NCBI Gene Expression Omnibus (GEO)Sean Davis | Sean Davis | software | 25 Oct 2026 | 15,960 | 73 |
| BSgenome Software infrastructure for efficient representation of full genomes and their SNPsHervé Pagès | Hervé Pagès | software | 28 Apr 2026 | 14,375 | 57 |
| affyio Tools for parsing Affymetrix data filesBen Bolstad | Ben Bolstad | software | 28 Apr 2026 | 10,615 | 1 |
| ShortRead FASTQ input and manipulationBioconductor Package Maintainer | Bioconductor Package Maintainer | software | 28 Apr 2026 | 8,126 | 53 |
| biocViews Categorized views of R package repositoriesBioconductor Package Maintainer | Bioconductor Package Maintainer | software | 28 Apr 2026 | 5,927 | 17 |
| MSnbase Base Functions and Classes for Mass Spectrometry and ProteomicsLaurent Gatto | Laurent Gatto | software | 9 Aug 2026 | 5,521 | 134 |
| flowCore flowCore: Basic structures for flow cytometry dataMike Jiang | Mike Jiang | software | 28 Apr 2026 | 4,651 | 21 |
| oligo Preprocessing tools for oligonucleotide arraysBenilton Carvalho | Benilton Carvalho | software | 28 Apr 2026 | 4,087 | 52 |
| oligoClasses Classes for high-throughput arrays supported by oligo and crlmmBenilton Carvalho | Benilton Carvalho | software | 28 Apr 2026 | 3,521 | 48 |
| affxparser Affymetrix File Parsing SDKKasper Daniel Hansen | Kasper Daniel Hansen | software | 28 Apr 2026 | 3,327 | 0 |
| tkWidgets R based tk widgetsJ. Zhang | J. Zhang | software | 28 Apr 2026 | 2,763 | 6 |
| widgetTools Creates an interactive tcltk widgetJianhua Zhang | Jianhua Zhang | software | 28 Apr 2026 | 2,636 | 3 |
| DynDoc Dynamic document toolsBioconductor Package Maintainer | Bioconductor Package Maintainer | software | 28 Apr 2026 | 2,514 | 2 |
| aroma.light Light-Weight Methods for Normalization and Visualization of Microarray Data using Only Basic R Data TypesHenrik Bengtsson | Henrik Bengtsson | software | 28 Apr 2026 | 2,481 | 8 |
| flowViz Visualization for flow cytometryMike Jiang | Mike Jiang | software | 26 Aug 2026 | 2,372 | 35 |
| ChemmineR Cheminformatics Toolkit for RThomas Girke | Thomas Girke | software | 28 Apr 2026 | 1,854 | 65 |
| microRNA Data and functions for dealing with microRNAs"Michael Lawrence" | "Michael Lawrence" | software | 28 Apr 2026 | 1,708 | 15 |
| chipseq chipseq: A package for analyzing chipseq dataBioconductor Package Maintainer | Bioconductor Package Maintainer | software | 28 Apr 2026 | 1,626 | 54 |
| GeneRegionScan GeneRegionScanLasse Folkersen | Lasse Folkersen | software | 28 Apr 2026 | 1,389 | 18 |
| aCGH Classes and functions for Array Comparative Genomic Hybridization dataPeter Dimitrov | Peter Dimitrov | software | 28 Apr 2026 | 1,323 | 17 |